Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1290 ATGTTTCCATTCCATCCTCATGGAGCTCCGAAACACGCTTGCACTCTTCTCGCTGTAACCTGTGGCGCAAGTTTCGCTGAGCACAAGGCCTCACAGAATCAGCACAAATATCCTTTTCCCGAGCTAGTTTCCGCGGGGCGTCTTGAGGTTCAAACTCTTCGGAATCCGGATAAGGAACAGTTTAGGAAAGTGCTGGAGTCGTATCAACCGAATTTTGTTTATTTGCAAGGAGAGCAGCTAGAGAATGACAAAGTTGGTTCACTGGTCTGGCAAGGTTTGGAATTATCGACTTCTGAGGATATCATAGAGCTCTTTGGTTCCACATTGCCGACGGCTGTTTATTTAGAAATACCAAATGGAGAAAGTTTTGCAGAGGCTCTTCATCTTAAGGGAATCCCATATGTTATATTTTGGAAGAATGCCTTTTTTTCTTATGCTGCCTGCCATTTTCGTCAAGCATTTCTTTCAGTTGTACAGAGTTCATCTACACATACCTGGGATGCTTTTCACCTTGCACGTGCCTCTTTTGAACTTTACTGTGTCCAAAACAATCAAGTGCTTTCTACCAACATCCATGATGCTATTAGTGAGATGGGGCCACACCTTCTCGGTGACTGTCTCAAAATCAATGTTGACCCTCCAGAGATTGATGAGGAAGATGATGACGAAAATTCCTCAGGCACTCTGCCTGCCATTAAGATACATGAAGATGAAGTGAACTTGAGATTTCTTGTCTGTGGTGCACCTTCGACTGTTGACGAGTCATTGCTAAGATCTTTGGAGGATGGACTCAGAGCTCTCTTAACTATTGAAATCCGCGGTTGCAAGCTCCATGGCAAGTTTAGTGCCCCACCACCACCTCTTCAGGCAGCCACTTTTTCTCGAGGAGTTGTAACCATGAGATGTGATATATCAACCTGTAGTTCTGCACATATCTCACTTCTGGTATCGGGCAGTGCACAAACTTGTTTTAATGATCAGCTCCTGGAAAGTCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCACGCGCAGCTCAACAATGAGGGAAACAAACAGAACATCTCTGAACCTCGCAGATCTGCTTCTATTGCCTGTGGAGCACCTGTATTTGAAATTTGCATGAAGCTTCCTCAATGGGCTTTGCAGATTTTGAGACAGCTAGCACCTGAGGTTTCTTATCGAAGTTTAGTTGCACTTGGTATTGCTAGTATTCAGGGGTTGCCTATAGCTTCTTTTGAGAAAGATGATGCCGAGCGCTTACTTTTCTTCTATCAAAGTTGTGAGAAAGATAGTGGTACAAGCAAAAATAATATAATATTTGGCAGTCCCCCTGGTTGGTTGAAACCACCCCCTCCTAGAAGAAAAAGGTGTGAATCAAGCCAAGGGGCTAGCCCTGGTCTTCATGAAGGCGTCTTTGCGGGGCCTGCCACTGTTTATAAAGTAAATGAAGAGGAAAAAGATAGAAAAATGGCAAATGGCATTAGCACCCCATTAGCTCCTGCTAGACAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCTCACATTCGGCGCCATAGAATGACACCTTTTTGTGGACCTTCTGAGACAGATGGTTTTGATGGTGGGCAAGTAGAGCCTACTTTGCCACTTGTTGCCCCAACAAAGCGTAGTATTGGATCAACATCTGCAACACATAGAAAATCATTTTCAAGTGCAGCTCAATCTAAGCAGGTTATTTCGTTGAACCCATTGCCTCTTAAGAAGCATGGTTGCGGTAGAGGCCCAGTACAGACGTGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGACATAATCGATTAATTCCTCAAGGAGGGCTTACCGAGTTCCCCGATGCCATACTCAATGGAAAACGTCTTGATCTCTACAATTTGTATAAAGAGGTGGTTACGAGGGGAGGATTTCATGTTGGCAATGGTATCAACTGGAAGGGGCAAATCTTTTCAAAGATGCGGAATTATACAACTACCAATAGAATGACTGGTGTTGGAAATACTCTGAAAAGACATTATGAGACCTACCTTTTAGAATATGAATTAGCACATGACGATGTGGATGGAGAATGTTGCTTGTTGTGTCACAGTAGTGCAGCTGGTGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCCCACTTTGGCTGTGACAGAAGGCAGGGTCTAGGCGCATTTAAGGATTATGCAAAAACAGATGGGTTAGAATACATATGTCCTCATTGTAGTGTTACAAATTTCAAGAAGAAACAAAATGTTACAAATGGGTATTCACAAGGGTCAATGTCTTCACGACACCTTTGA 2346 0.4331 MFPFHPHGAPKHACTLLAVTCGASFAEHKASQNQHKYPFPELVSAGRLEVQTLRNPDKEQFRKVLESYQPNFVYLQGEQLENDKVGSLVWQGLELSTSEDIIELFGSTLPTAVYLEIPNGESFAEALHLKGIPYVIFWKNAFFSYAACHFRQAFLSVVQSSSTHTWDAFHLARASFELYCVQNNQVLSTNIHDAISEMGPHLLGDCLKINVDPPEIDEEDDDENSSGTLPAIKIHEDEVNLRFLVCGAPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLESHIKNEIIEKSQLVHAQLNNEGNKQNISEPRRSASIACGAPVFEICMKLPQWALQILRQLAPEVSYRSLVALGIASIQGLPIASFEKDDAERLLFFYQSCEKDSGTSKNNIIFGSPPGWLKPPPPRRKRCESSQGASPGLHEGVFAGPATVYKVNEEEKDRKMANGISTPLAPARQRLKVSAMRPIPHIRRHRMTPFCGPSETDGFDGGQVEPTLPLVAPTKRSIGSTSATHRKSFSSAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHNRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQNVTNGYSQGSMSSRHL* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1290 781 Gene3D - 593 698 IPR036431 GO:0003677
Pvu10g1290 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 771 - -
Pvu10g1290 781 SMART ARID_2 592 695 - -
Pvu10g1290 781 SUPERFAMILY FYVE/PHD zinc finger 691 759 IPR011011 -
Pvu10g1290 781 ProSiteProfiles ARID domain profile. 595 699 IPR001606 GO:0003677
Pvu10g1290 781 CDD ARID 597 695 - -
Pvu10g1290 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 762 IPR013083 -
Pvu10g1290 781 SUPERFAMILY ARID-like 595 710 IPR036431 GO:0003677
Pvu10g1290 781 MobiDBLite consensus disorder prediction 441 470 - -
Pvu10g1290 781 SMART bright_3 596 700 IPR001606 GO:0003677
Pvu10g1290 781 Pfam ARID/BRIGHT DNA binding domain 598 695 IPR001606 GO:0003677
Pvu10g1290 781 CDD PHD_ARID4_like 705 756 - -
Pvu10g1290 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 771 IPR042293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1290 Pvu-Chr10 39381389 39389624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1290 4 770 ARID Transcription Factor Family AT3G43240 59.561 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pvu10g1290 ARID 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1290 - - gmx:100816540 1442.17