Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1282 ATGACTACCCCAAAACTTCCCTACGCCGGAATCGGAGATTCCGGTGATTCCGGCGATTCCGGCAACCACATTTCCCTCTCTAAAAAAACCTACAACAAGAAGAAGAAGCTTTTCCTCACACTCTTCGCCACCCTCCTGGTGGCGGCCTCCGTCGTGGCCATCGTCGCCGGAGTAAAAAACAAAAACCAAAAGTCCGACAGCAGCAGCAGCACCCCTCTCACCCTCTCCCACCAGTCCCACGAGATCATCAAGAGCGCGTGCAGCTCCACATTCTACTCAGAACTCTGCTTCTCCGCAGTTGCTTCAGAACCCAACGTCACCCACAAAGTAACCTCTCACCGTGACGTCATCCAACTCTCCCTCAAGATCACCACGCGCGCGGTGGAGCACAACTACTTCACCGTCAAGAAGCTCTCCACCAAAGGCGGCCTCACGAAGCGCGAGAAAACGGCGCTCCACGACTGCCTGGAAACCATCGACGAGACGCTCGACGAGCTGAGAGAGGCTCAGCACGATCTCGAGCTCTACCCCAACAAGAAAACTCTGTACCAGCACGCCGACGACCTCAAAACCCTCATCAGCGCCGCCATAACCAACCAGGTCACGTGCCTCGACGGCTTCTCGCACGAGGACGCCGATAAGCGCGTCCGGAAGGCTCTGGAAGAAGGACAGGTGCACGTGGAACGCATGTGCAGCAACGCACTCGCCATGACCAAGAACATGACCGACACCGACATTGCCAACTTCGAACAGACCACGAAGCTCCGAGACAACAACGCTGGCCAAAATAGAAAGCTCTTGGCGGAGGAGAGCAATGCCAATGGCGACGGTGTAGTCTGGCCGGAGTGGATTTCTGCTGCCGACAGGAGGCTGCTTCAGGCCGCGGCGGTGAATGCCGATGTGGTGGTGGCGGCGGACGGTAGCGGAGACTTCAAGACGGTGTCGGAGGCCGTGGAAGCCGCTCCGTTGAAGAGTAGTAAGAGATTTGTTATTAGGATAAAGGCTGGAGTTTACAGAGAGAATGTGGAAGTTCCTAAGAAGAAGACTAACATCATGTTCTTGGGTGACGGAAGAACAAGCACCATCATCACCGCCAGTAGAAATGTCGTTGACGGCAGCACCACCTTCCACTCCGCCACCGTCGCTGTGGTGGGTGGAAACTTCCTAGCCAGAGACATAACATTCCAAAACACTGCTGGGGCCTCAAAGCACCAAGCTGTGGCCCTAAGAGTAGGAGGGGACCTCTCAGCATTCTACAACTGTGACATCTTAGCGTACCAAGACACCCTCTATGTCCACAACAACCGTCAATTCTTTGTGAATTGCCTGATTGCAGGAACAGTGGATTTCATCTTTGGAAACTCGGCAGTGGTGTTCCAAGACTGTGACATCCACGCGAGGCGTCCAGACTCGGGCCAGAAGAACATGGTGACGGCCCAGGGAAGAGTAGACCCTAACCAGAACACGGGCATTGTGATCCAGAAGTGCAGGATTGGTGCCACTTCGGACTTGGAGTCCGTGAAGAAGAGTTTCAAGACGTATCTTGGGAGGCCATGGAAGGAGTACTCCAGGACTGTGATCATGCAGAGTAGTATCAGTGATGTGATTGACCCTGTTGGGTGGCATGAGTGGAGTGGGAACTTTGCATTGAGCACTTTGGTCTATAGGGAGTATCAGAACACTGGGCCTGGTGCTGGAACCTCCAGTAGGGTCTCTTGGAAAGGGTTCCAGGTCATCACTGATGCTGGTGAGGCCCGGGCTTTTACCCCCGGAAGCTTCATTGGGGGCTCCAGCTGGTTGGGCTCCACAGGCTTTCCTTTCTCTCTTGGGTTTATGGATACAATTAAGTCCTTCAAGGGCTACGGGAAAGTGAACGAGTTGGAGCAGCAAGCCTATGAGAAGAAGACACGTAAGCGCCTCATAATCATCGCAGTTTCTTCCATCGTTCTAATTGCGGTCATCATCGCTGCGGTTGCAGGGGTCGTCATACACAACCGCAACAGCGAATCATCACCCTCGTCTGACTCGGTTCCGCAAACTGAGTTATCTCCTGCCGCGTCACTCAAAGCGGTGTGCGACACCACTCGCTACCCTAGCTCCTGCTTCTCCTCCATATCCTCGTTGCCGGAATCCAACACCACCGACCCGGAGCTCCTCTTCAAGCTCTCGCTCCGCGTCGCCATTGACGAGCTCTCCAGCTTCCCTTCCAAGCTTCGCGCCAATGCGGAGCAGGACGCGCGTCTGCAGAAGGCGATTGACGTCTGCAGTTCCGTCTTCGGCGACGCGCTGGACCGCCTCAACGACTCGATCTCCGCGCTCGGAACCGTCGCCGGGAGGATTGCTTCTTCGGCGAGCGTCAGCAACGTGGAGACGTGGCTCAGCGCGGCGCTCACGGACCAGGACACGTGCCTTGACGCGGTCGGCGAGCTTAACTCCACCGCTGCTCGCGGCGCTCTCCAGGAGATCGAGACTGCCATGAGGAACTCCACGGAGTTCGCGAGCAACAGTTTGGCTATCGTCACGAAGATCCTAGGGCTGCTGTCGCGGTTCGAGACGCCGATTCACCACCGGCGGCTGCTAGGATTTCCGGAGTGGCTGGGCGCGGCGGAGCGAAGGCTGCTGGAGGAGAAGAACAACGACTCCACGCCGGATGCTGTGGTGGCGAAGGACGGCAGTGGACAGTTCAAGACGATCGGCGAGGCGCTGAAGTTGGTGAAGAAGAAGAGCGAGGAGAGATTCTCGGTGTACGTGAAGGAAGGGAGGTACGTGGAGAACATCGATTTGGATAAGAACACGTGGAATGTGATGATCTATGGTGATGGCAAGGACAAAACCTTCGTCGTCGGTAGCCGGAACTTCATGGACGGAACGCCGACTTTCGAAACTGCAACTTTCGCTGTTAAAGGCAAGGGATTCATTGCCAAAGACATAGGGTTTGTGAACAATGCAGGTGCTTCAAAGCACCAGGCTGTGGCATTGAGATCTGGGTCGGATCGCTCTGTGTTCTTCAGATGCTCGTTTGATGGCTTCCAAGACACCCTCTATGCCCATTCCAACCGCCAATTCTACCGTGACTGTGACATTACAGGCACCATAGACTTCATATTTGGCAATGCAGCTGTTGTGTTCCAAAGCTGCAAAATAATGCCTAGACAGCCCCTACCAAACCAGTTCAACACCATCACAGCTCAGGGCAAGAAAGACCCTAACCAGAACACTGGAATTATAATTCAGAAATCAACGATTACTCCCTTTGGCAACAATCTCACAGCCCCCACATACCTTGGGAGGCCATGGAAAGATTTCTCCACCACTGTCATCATGCAATCTGATATTGGGGCATTGCTGAATCCGGTGGGGTGGATGAGTTGGGTCCCTAATGTGGAACCTCCAACTACCATCTTCTATGCAGAGTATCAGAATAGTGGGCCGGGAGCTGACGTGTCCCAAAGGGTCAAATGGGCCGGTTATAAGCCCACTATCACCGACCGCAACGCAGAGGAGTTCACTGTGCAGTCCTTTATCCAAGGCCCGGAATGGTTGCCAAATGCAGCTGTGCAGTTTGATTCCACCTTGTGA 3579 0.5462 MTTPKLPYAGIGDSGDSGDSGNHISLSKKTYNKKKKLFLTLFATLLVAASVVAIVAGVKNKNQKSDSSSSTPLTLSHQSHEIIKSACSSTFYSELCFSAVASEPNVTHKVTSHRDVIQLSLKITTRAVEHNYFTVKKLSTKGGLTKREKTALHDCLETIDETLDELREAQHDLELYPNKKTLYQHADDLKTLISAAITNQVTCLDGFSHEDADKRVRKALEEGQVHVERMCSNALAMTKNMTDTDIANFEQTTKLRDNNAGQNRKLLAEESNANGDGVVWPEWISAADRRLLQAAAVNADVVVAADGSGDFKTVSEAVEAAPLKSSKRFVIRIKAGVYRENVEVPKKKTNIMFLGDGRTSTIITASRNVVDGSTTFHSATVAVVGGNFLARDITFQNTAGASKHQAVALRVGGDLSAFYNCDILAYQDTLYVHNNRQFFVNCLIAGTVDFIFGNSAVVFQDCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATSDLESVKKSFKTYLGRPWKEYSRTVIMQSSISDVIDPVGWHEWSGNFALSTLVYREYQNTGPGAGTSSRVSWKGFQVITDAGEARAFTPGSFIGGSSWLGSTGFPFSLGFMDTIKSFKGYGKVNELEQQAYEKKTRKRLIIIAVSSIVLIAVIIAAVAGVVIHNRNSESSPSSDSVPQTELSPAASLKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKLSLRVAIDELSSFPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSASVSNVETWLSAALTDQDTCLDAVGELNSTAARGALQEIETAMRNSTEFASNSLAIVTKILGLLSRFETPIHHRRLLGFPEWLGAAERRLLEEKNNDSTPDAVVAKDGSGQFKTIGEALKLVKKKSEERFSVYVKEGRYVENIDLDKNTWNVMIYGDGKDKTFVVGSRNFMDGTPTFETATFAVKGKGFIAKDIGFVNNAGASKHQAVALRSGSDRSVFFRCSFDGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQSCKIMPRQPLPNQFNTITAQGKKDPNQNTGIIIQKSTITPFGNNLTAPTYLGRPWKDFSTTVIMQSDIGALLNPVGWMSWVPNVEPPTTIFYAEYQNSGPGADVSQRVKWAGYKPTITDRNAEEFTVQSFIQGPEWLPNAAVQFDSTL* 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1282 1192 ProSitePatterns Pectinesterase signature 2. 444 453 IPR033131 -
Pvu10g1282 1192 PANTHER PECTINESTERASE 30 608 - -
Pvu10g1282 1192 PANTHER PECTINESTERASE 619 1189 - -
Pvu10g1282 1192 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 242 IPR035513 -
Pvu10g1282 1192 Gene3D Invertase/pectin methylesterase inhibitor family protein 686 844 IPR035513 -
Pvu10g1282 1192 ProSitePatterns Pectinesterase signature 1. 325 344 IPR018040 -
Pvu10g1282 1192 TIGRFAM PME_inhib: pectinesterase inhibitor domain 72 241 IPR006501 GO:0004857
Pvu10g1282 1192 TIGRFAM PME_inhib: pectinesterase inhibitor domain 679 843 IPR006501 GO:0004857
Pvu10g1282 1192 ProSitePatterns Pectinesterase signature 2. 1028 1037 IPR033131 -
Pvu10g1282 1192 CDD PMEI-like_3 85 242 - -
Pvu10g1282 1192 Pfam Pectinesterase 884 1177 IPR000070 GO:0030599|GO:0042545
Pvu10g1282 1192 Pfam Pectinesterase 300 596 IPR000070 GO:0030599|GO:0042545
Pvu10g1282 1192 SUPERFAMILY Pectin lyase-like 882 1189 IPR011050 -
Pvu10g1282 1192 Gene3D - 878 1192 IPR012334 -
Pvu10g1282 1192 Gene3D - 294 611 IPR012334 -
Pvu10g1282 1192 Pfam Plant invertase/pectin methylesterase inhibitor 82 237 IPR006501 GO:0004857
Pvu10g1282 1192 Pfam Plant invertase/pectin methylesterase inhibitor 688 839 IPR006501 GO:0004857
Pvu10g1282 1192 Coils Coil 152 172 - -
Pvu10g1282 1192 ProSitePatterns Pectinesterase signature 1. 909 928 IPR018040 -
Pvu10g1282 1192 Gene3D Invertase/pectin methylesterase inhibitor family protein 78 242 IPR035513 -
Pvu10g1282 1192 SUPERFAMILY Pectin lyase-like 295 610 IPR011050 -
Pvu10g1282 1192 CDD PMEI-like_3 690 843 - -
Pvu10g1282 1192 PANTHER PECTINESTERASE 1-RELATED 619 1189 - -
Pvu10g1282 1192 PANTHER PECTINESTERASE 1-RELATED 30 608 - -
Pvu10g1282 1192 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 688 844 IPR035513 -
Pvu10g1282 1192 SMART PMEI_2 78 237 IPR006501 GO:0004857
Pvu10g1282 1192 SMART PMEI_2 683 839 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1282 Pvu-Chr10 39313000 39323526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1282 26 611 Carbohydrate Esterase AT3G14310 70.067 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1282 K01051 - pvu:PHAVU_010G123100g 2236.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2702 9 37347937 37350658 Pvu10g1282 10 39313000 39323526 PCT