Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1277 ATGGGTCCAACTGCGACCTCCGTGTCCAGTGACAACCCATTGGGTGAATCTAATACAATTGAGATAACAGGGAAGATCATGGTGGTGGCTATAGTGTTCCTTTTCATGGTGGTTGTGTTTGTTCTTGTGCTTCATCTATATGCAAAATGGTTCTGGTGGAACATGGGGGAGAACGCCGCTCCTCAGCCTCGCCAGAGGCGGCGGAGGCGCCGCCGGTTTGTGTTCGCCCCCGGGCAAGACCCGGTGGTCTATGAGACCCACCAAGTTGGGCTTGACCCTTCAGTTTTAAGGTCCTTGCCGGTGTTGGTGTTCCAACCTGAGGACTTCAAAGAAGGTTTGGAGTGTGCAGTTTGTCTCTCTGAGATTGTTCAAGGGGAAAAGGCCAGGCTTTTGCCCAAATGCAATCATGGGTTCCATGTGGATTGCATTGACATGTGGTTCCATTCGCACTCCACTTGCCCTCTTTGTAGGAACCCTGTTGGTTTTGAATCGTCTAAAACAATTGAAGAGAGTAATTCCTCAGGGAACATTGATTCATCATCTTTAGCACACGAAGAGAATTCAGGTGCTGTGAGTGGCTCACAGTCTTCAAATTTTCCCACAAATGTGTTGGTTTGGGGGAACCAGACACAGGTTAGTTCTTTTGGGGTTTCCTTGGCAGAGGAAGAAGGGAGTTCTCAGCAGCCACCTTCTCCTCCATCATCTACACCATCTTCTTCTTCAGATTGTGGCAATGTTAATGGTAGATGTCATGGAATGTTGGTGATTGATATTCCAAGTGAGTGCACTTCCTCCTCTTTATCCCCTTCTGGAAGTAGGTGTGCTGAAGATGAGATGAAATCACCAATGGCTGCCACATTGCGGTCATTTAAGAGGCTTTTGAGCCGGGACAAAAAGTTAAGTCCTTGCAGTCCAAGTTCTGTAGATGTGGAACACGCACAGAGCTAG 948 0.481 MGPTATSVSSDNPLGESNTIEITGKIMVVAIVFLFMVVVFVLVLHLYAKWFWWNMGENAAPQPRQRRRRRRRFVFAPGQDPVVYETHQVGLDPSVLRSLPVLVFQPEDFKEGLECAVCLSEIVQGEKARLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVGFESSKTIEESNSSGNIDSSSLAHEENSGAVSGSQSSNFPTNVLVWGNQTQVSSFGVSLAEEEGSSQQPPSPPSSTPSSSSDCGNVNGRCHGMLVIDIPSECTSSSLSPSGSRCAEDEMKSPMAATLRSFKRLLSRDKKLSPCSPSSVDVEHAQS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1277 315 MobiDBLite consensus disorder prediction 262 282 - -
Pvu10g1277 315 SMART ring_2 115 156 IPR001841 -
Pvu10g1277 315 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Pvu10g1277 315 MobiDBLite consensus disorder prediction 167 195 - -
Pvu10g1277 315 PANTHER RING-H2 FINGER PROTEIN ATL3 8 308 - -
Pvu10g1277 315 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 308 IPR044675 -
Pvu10g1277 315 CDD RING-H2_EL5_like 114 157 - -
Pvu10g1277 315 MobiDBLite consensus disorder prediction 216 243 - -
Pvu10g1277 315 SUPERFAMILY RING/U-box 95 162 - -
Pvu10g1277 315 Pfam Ring finger domain 114 157 IPR001841 -
Pvu10g1277 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1277 Pvu-Chr10 39266194 39267770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1277 21 298 C3H Transcription Factor Family AT1G53820 43.648 1.69e-65 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1277 - - gmx:100775523 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1277 10 39266194 39267770 Pvu10g1277 10 39266194 39267770 ECH
Pvu9g2699 9 37333219 37335367 Pvu10g1277 10 39266194 39267770 PCT