Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1276 ATGAATACCATTCTCACCATCCTCACAGCCATTGCTTTTGTGGCTCAATCATTGCAAAACTACATCATCCAGAGGCTGCACAAAATCTGCAAGCATTGGGGATATGGTGATGCAGTGAAGGAAAAAGGAGATGATGAAATGGACTATTGTTCAGTGTGTCTGAGCCAAATTTGTGAGGGGGAAAAGGTTAGGTCTCTACCAGTATGCAATCACAGGTACCATGCTGATTGTATTGGTGCTTGGCTTAAGAACCATACCACATGCCCTCTTTGCAGAAACAAAATCACTGATCATTTCGTCCAAAAGCACAGACAGGTGAAGAGCTTAGGAGAATCTGTGTTCAATCTCATACAGAGTTTCTCAGATCTTTTGGTATCTATTCTCTACATGCTACTTCCATCCAGCATCACTGAGAGTTTCCCTTTGGTTCATTGA 435 0.423 MNTILTILTAIAFVAQSLQNYIIQRLHKICKHWGYGDAVKEKGDDEMDYCSVCLSQICEGEKVRSLPVCNHRYHADCIGAWLKNHTTCPLCRNKITDHFVQKHRQVKSLGESVFNLIQSFSDLLVSILYMLLPSSITESFPLVH* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1276 144 SMART ring_2 50 91 IPR001841 -
Pvu10g1276 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 98 IPR013083 -
Pvu10g1276 144 SUPERFAMILY RING/U-box 49 98 - -
Pvu10g1276 144 Pfam Ring finger domain 49 92 IPR001841 -
Pvu10g1276 144 ProSiteProfiles Zinc finger RING-type profile. 50 92 IPR001841 -
Pvu10g1276 144 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 16 98 IPR044675 -
Pvu10g1276 144 CDD RING-H2_PA-TM-RING 50 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1276 Pvu-Chr10 39258849 39259497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1276 50 95 C3H Transcription Factor Family AT1G53820 56.522 2.69e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1276 - - vun:114167536 241.891