Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1272 ATGGTGTTGGATTCAAGGCTGGTGCTGGTACTGTTCATCAGCACTTGCATTTTGGCCATCAATGGCGGCGAAACAGATCCAAATGACGTTGCTTCTCTGAAGGTTATGTTTCAAAGTATGAACTCACCACCCCAGCTAAATTGGAATGGGGATGATCCTTGTGGACAGTCTTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATTAAGTTACCTGGTCGTTCACTTTCCGGATCTTTGGGTTACCAGCTAGAATCCTTGTCATTGGTTACAAACCTAGACTTGAGTAACAATAATCTTGGTGGCACCATACCATACCAACTTCCTCCTAATCTACAGTACTTAAATCTTGCCAATAATAATTTCAATGGGGAAGTCCCTTATTCTCTTTCTCAGAAGACTTCGCTTGTAGTCGTGAATCTTGGTCACAATCAGCTCCAGCAAGCACTTAATGTTGATTTTCAAAAGCTTTCTTCCCTCTCTACATTGGATCTCTCATTCAATTCTTTGACTGGTAACCTGCCTCAGACTCTGAGCTCACTTTCCAGCATAAGCACCATGTATCTGCAAAACAACCAGTTTACAGGCACCATTAATGTCCTTGCTAATCTGCCTCTGGAAACGCTGAATGTGGGAAATAATCATTTTACTGGCTGGATACCAGAACAATTGAATAACATAAACCTGCAAAAGGATGGTAATGATTGGAGCTCAGGACCTGCACCCCCACCTCCTCCCGGGACACCTCCAGTAGCAACAAGAAATCGAAATCACAGATCTGGTGGACAGACCCCATCAGATGCTGGCTCAAGCAGCGATGGAGGCAAAAAATCTGGTATTGGAGGTGGTGGCATTGCTGGAATAGTGATCTCCATCTTGGTTGTTGGGGCAATAGTAGCATTCTTTCTGGTGAAGAAAAGATCCAAGAAGTCGTTTAGTGATATTGAAAAGCTTGACAATCAGCCCTTGGCTCCTCATACTTCACGTCATCATGAAGTGAATTCAATGCAAACCTCATCTGTAATTGACTTGAATACATTTGATACACCTGCGGCCCCAATAAGTCTTAAACCTCCACCTATTGATCGTCATAAGTCATTTGACGAGGATGAGTTTTCAAAGAAGCCCACTACAGTCATTAAGCCCACTACAGTAAAGAAGACCGTCACAGCTCCTACAAATGTAAAATCTTATTCTATAGCTGACCTACAGATTGCTACTGGAAGCTTCAGTGTGGATCAACTTCTTGGTGAGGGGTCTTTTGGACGTGTGTATCGGGCTCAATTTGATGATGGAAAGGTTCTTGCTGTCAAGAAGATAGATTCATCTGTCCTTCCCAATGATTTGTCTGACGATTTTCTGGAACTGGTTTCAAGCATATCTAATTTGCACCATCCCAATGTGACAGAGCTTGCAGGTTATTGTTCAGAGCATGGACAACACCTACTAGTCTATGAGTTTCATCAAAATGGATCACTGCATGACTTCCTTCACCTACCTGATGAGTATAGTAAACCATTGATATGGAATTCACGTGTGAAGATTGCTTTGGGGATTGCACGGGCTTTAGAGTACCTCCATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTCAGCCAACATATTGCTTGATACAGATCTTAATCCTCATCTTTCCGACAGTGGATTGGCAAGCTATATTCCAAATGCAAATCAGGTATTGAACAATAATTCTGGATCTGGATATGAAGCTCCCGAAGTTGGCATGTCTGGCCAATATACTCTTAAGAGTGATGTCTTTAGCTTTGGAGTTATCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAGCTCAAGGCCAAGGTCTGAGCAGGGTTTGGTTCGATGGGCAACACCTCAACTCCATGATATCGATGCTCTGGCTAAAATGGTTGATCCTGCATTAGAAGGACTATACCCTGTGAAGTCTCTTTCTCGATTTGCAGATGTTATTGCTCTTTGTGTTCAGCCGGAGCCGGAGTTCCGACCACCTATGTCAGAAGTGGTTCAAGCGCTGGTTCGATTAGTGCAACGAACTAACATGAGTAAGAGGACAACGTTTGGAACTGATCAAGGAGGATCCAACCGAGGGGGAGATAACCAAGAATCACAAGACATGTAA 2157 0.4316 MVLDSRLVLVLFISTCILAINGGETDPNDVASLKVMFQSMNSPPQLNWNGDDPCGQSWQGITCSGNRVTEIKLPGRSLSGSLGYQLESLSLVTNLDLSNNNLGGTIPYQLPPNLQYLNLANNNFNGEVPYSLSQKTSLVVVNLGHNQLQQALNVDFQKLSSLSTLDLSFNSLTGNLPQTLSSLSSISTMYLQNNQFTGTINVLANLPLETLNVGNNHFTGWIPEQLNNINLQKDGNDWSSGPAPPPPPGTPPVATRNRNHRSGGQTPSDAGSSSDGGKKSGIGGGGIAGIVISILVVGAIVAFFLVKKRSKKSFSDIEKLDNQPLAPHTSRHHEVNSMQTSSVIDLNTFDTPAAPISLKPPPIDRHKSFDEDEFSKKPTTVIKPTTVKKTVTAPTNVKSYSIADLQIATGSFSVDQLLGEGSFGRVYRAQFDDGKVLAVKKIDSSVLPNDLSDDFLELVSSISNLHHPNVTELAGYCSEHGQHLLVYEFHQNGSLHDFLHLPDEYSKPLIWNSRVKIALGIARALEYLHEVCSPSVVHKNIKSANILLDTDLNPHLSDSGLASYIPNANQVLNNNSGSGYEAPEVGMSGQYTLKSDVFSFGVIMLELLSGRKPFDSSRPRSEQGLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTTFGTDQGGSNRGGDNQESQDM* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1272 718 Pfam Protein tyrosine and serine/threonine kinase 414 684 IPR001245 GO:0004672|GO:0006468
Pvu10g1272 718 SUPERFAMILY L domain-like 45 228 - -
Pvu10g1272 718 MobiDBLite consensus disorder prediction 255 275 - -
Pvu10g1272 718 Gene3D Ribonuclease Inhibitor 29 136 IPR032675 -
Pvu10g1272 718 PANTHER OS01G0253100 PROTEIN 21 715 IPR045271 GO:0004714|GO:0006468
Pvu10g1272 718 SUPERFAMILY Protein kinase-like (PK-like) 391 684 IPR011009 -
Pvu10g1272 718 ProSiteProfiles Protein kinase domain profile. 412 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu10g1272 718 MobiDBLite consensus disorder prediction 232 279 - -
Pvu10g1272 718 MobiDBLite consensus disorder prediction 695 718 - -
Pvu10g1272 718 Gene3D Transferase(Phosphotransferase) domain 1 491 705 - -
Pvu10g1272 718 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Pvu10g1272 718 PANTHER STRUBBELIG-RECEPTOR FAMILY 6 PROTEIN 21 715 - -
Pvu10g1272 718 PRINTS Leucine-rich repeat signature 92 105 - -
Pvu10g1272 718 PRINTS Leucine-rich repeat signature 159 172 - -
Pvu10g1272 718 ProSitePatterns Protein kinases ATP-binding region signature. 418 441 IPR017441 GO:0005524
Pvu10g1272 718 CDD STKc_IRAK 418 687 - -
Pvu10g1272 718 Gene3D Ribonuclease Inhibitor 137 237 IPR032675 -
Pvu10g1272 718 Gene3D Phosphorylase Kinase; domain 1 374 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1272 Pvu-Chr10 39227281 39235485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1272 8 717 Strubbelig Receptor Gene Family AT1G53730 63.874 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Pvu10g1272 PK_Tyr_Ser-Thr 1.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1272 - - gmx:100780323 1217.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2694 9 37314187 37322672 Pvu10g1272 10 39227281 39235485 PCT