Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1271 ATGATGACCACCAACACCAGTGTCAAAAACAACAACGTTGGAGAATTTGGGGACACCACTCTCACCAAGGTTTTTGTTGGGGGCTTAGCATGGGAGACTCCCAAGGATGCCCTTAGGGACCATTTTGAAAAGTATGGTGAGATCCTTGAAGCTGTCATCATTTCTGATAAGCTTACTGCCAAATCCAAAGGCTATGGCTTTGTGACTTTCAAAGAGGCTGAGGCTGCCAAGAAGGCTTGCGAGGACTCTGCAACTCTTGTTATCAATGGCCGTCGAGCCAACTGCAATCTGGCTTTCTTAGGTGCTCGTCGTCCAAGGTCTTCTTCCACTGCTTCACCACCTCCACAGCCGCAAGGAGGATCAAACAGTGGAGTGGTGAAGAACAATGCAGCAGGGAATCACGTGCAGCCATATTATCATCCACTGAGGACAACTGCTATGCCCTTCCACAATCACCCTCTTCCTTACTATGGCTACACTCCAACCTACATTGTGACAGACATGAACTACAATTACAACCAGAAACTGAGCTATGGCAACGGTGGGGCATACCTGAATGGGCAGCAGTTGTCCCATGTGTACCCTAGGCAGGGTATTGTGGGTGGCAACACAGTAATGCCAGTGTACCCTCTCTATCAGTATCATCATCCAACGGAGACCATAGGCCTACCAGCACACAACTTTTATCCAACGGCACCCTGGGCCCCATTCACCATCATTTCCAAACCATCTTCTATCATTCCTCATACAGGTACAGTTGGCACAGGTGAGTGCTTTAAAAGGGTTGTCTGA 792 0.4861 MMTTNTSVKNNNVGEFGDTTLTKVFVGGLAWETPKDALRDHFEKYGEILEAVIISDKLTAKSKGYGFVTFKEAEAAKKACEDSATLVINGRRANCNLAFLGARRPRSSSTASPPPQPQGGSNSGVVKNNAAGNHVQPYYHPLRTTAMPFHNHPLPYYGYTPTYIVTDMNYNYNQKLSYGNGGAYLNGQQLSHVYPRQGIVGGNTVMPVYPLYQYHHPTETIGLPAHNFYPTAPWAPFTIISKPSSIIPHTGTVGTGECFKRVV* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1271 263 Gene3D - 3 112 IPR012677 -
Pvu10g1271 263 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 9 246 - -
Pvu10g1271 263 CDD RRM_RBM24_RBM38_like 22 98 - -
Pvu10g1271 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 100 IPR000504 GO:0003723
Pvu10g1271 263 PANTHER GEO13361P1-RELATED 9 246 - -
Pvu10g1271 263 SMART rrm1_1 23 96 IPR000504 GO:0003723
Pvu10g1271 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 91 IPR000504 GO:0003723
Pvu10g1271 263 MobiDBLite consensus disorder prediction 104 127 - -
Pvu10g1271 263 SUPERFAMILY RNA-binding domain, RBD 18 121 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1271 Pvu-Chr10 39214177 39216258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1271 18 163 C2H2 Transcription Factor Family AT2G19380 28.571 7.53e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1271 - - vra:106778170 484.952