Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1261 ATGGAGGACATAATTTCCATTCTTGATCACTTGCCTGTAGGATTCAGATTCCGTCCCACAGATGAGGAGCTTGTCAATCATTACCTCAAACACAAGTTGCTGGGTGATGATTTCTCTGTTCAGTTCATTCCAGAGATCGACCTCTGCAAAGTGGAACCTTGGGACGTGCCAGCAAAATCAATATTCAAATCCGATGAGCTGCAATGGTTTTTCTTCAGTTCTGTGGATTACAAGTACTCCAATAGTAAAAGGGTCAACAGGACAACCGAGCATGGCTTCTGGAAATCCACTGGAAATGACCGTAACATTAAGACTGGTGGCAGTAAAAATGTTATTGGGACAAAGAAGACTCTTGTTTTCCACAAAGGCCGTGTTCCTGGTGGTCAAAGGACCAACTGGGTTATTCATGAATATCATGCTCTTGCCTCCCGTGAAAGCCAGACTTACGTTTTATGCCGCTTGATGAAGAAATTTGAGAATAAAAATGAAGGGAGAATTGATGCACCAAACTTTAGTGGAGGCGAGCCCAGCACAAGCATGGTTTCTGACTATGGAAATCAGGCAGATATTTTACCTAGAATGATTGTGGATCCAATCTTTCCAGAAGAGATTTTCTTCTCCCCAGTACAACAGCCTCCAGTTGGTATTGAAGTGGAAGGATTTTTCCCAAACTCCCCAACGCGCAATGCTTGTTTTGGAAATGAAAGCATCAATATGCAAATTCCATTTGGAGTTACTGATGATGAAGATGAGTTCCTAAATTCAATACTGGTTGATAATGAGGAGTTTGTTATCAATGAAGAAAGAAGAGACTGTTTTGTCAATCGTTCCACCCAACCAAAGTCATTGAGAAGAGTATACTATGCAAGCAGTGACACAGATGCTGAAGTTGTCTCTAATCTGCATGGTAACATTTGTTCTGGTGAATTCTCTGTTCGTGGTGGCATGAGTAGTCTAGCTTCAAATCATGAAGCACACAAAGAAAAAAAGGAGAGTATCATTCAAGATGATTTCTGGGCAGTGGAGACATCCTCTTGTGACTCAACTGCAGATGAACCTGTCGAAACAACAAGATTGGAAAATCGTTATAATCTAAGACCAGACAACTTCATATTACAAAAAACTGTTGCAGGAAGACCTCAAACACAGAAGAAGGTTTCAAACAATGCAGTATCCCACATAGAGGCTCGGAAGGAATTGGTCACTGTGAAATCAGAGAAAGATCAGAAAAGTACTCAAAATACTAGTTCAAGAGGGATCCTCAAGATCAGAAGCCATCAATCATCTAATGTCAATAGCAAAAGTTCTTTCTTTTACATGGAAACGACTTCATCAAACCAAAACCTGTTTCCACGTTCAGTATATCTTGTCAATGTTGTCATAGGGATTCTGTTGTTAATAGTCATTAGTTGGGACGTATTATTATGTTAG 1431 0.4025 MEDIISILDHLPVGFRFRPTDEELVNHYLKHKLLGDDFSVQFIPEIDLCKVEPWDVPAKSIFKSDELQWFFFSSVDYKYSNSKRVNRTTEHGFWKSTGNDRNIKTGGSKNVIGTKKTLVFHKGRVPGGQRTNWVIHEYHALASRESQTYVLCRLMKKFENKNEGRIDAPNFSGGEPSTSMVSDYGNQADILPRMIVDPIFPEEIFFSPVQQPPVGIEVEGFFPNSPTRNACFGNESINMQIPFGVTDDEDEFLNSILVDNEEFVINEERRDCFVNRSTQPKSLRRVYYASSDTDAEVVSNLHGNICSGEFSVRGGMSSLASNHEAHKEKKESIIQDDFWAVETSSCDSTADEPVETTRLENRYNLRPDNFILQKTVAGRPQTQKKVSNNAVSHIEARKELVTVKSEKDQKSTQNTSSRGILKIRSHQSSNVNSKSSFFYMETTSSNQNLFPRSVYLVNVVIGILLLIVISWDVLLC* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1261 476 Gene3D NAC domain 20 162 IPR036093 GO:0003677|GO:0006355
Pvu10g1261 476 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Pvu10g1261 476 ProSiteProfiles NAC domain profile. 11 157 IPR003441 GO:0003677|GO:0006355
Pvu10g1261 476 MobiDBLite consensus disorder prediction 403 424 - -
Pvu10g1261 476 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 430 - -
Pvu10g1261 476 SUPERFAMILY NAC domain 8 157 IPR036093 GO:0003677|GO:0006355
Pvu10g1261 476 MobiDBLite consensus disorder prediction 407 424 - -
Pvu10g1261 476 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 8 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1261 Pvu-Chr10 39129835 39133251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1261 8 164 NAC Transcription Factor Family AT4G35580 52.761 5.43e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu10g1261 NAM 6.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1261 - - gsj:114390609 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1261 10 39129835 39133251 Pvu10g1261 10 39129835 39133251 ECH