Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1260 ATGGGTATTGTTGGTGTTGGTTTCCGTCCGACAGAACAAGAACTTGTCGATTTCTACCTCAAACACAAGTTGCTCGCTGATGATTCTCGTGTCCACCTCATCCCTGTCATTGACCTCTGCGATGTGGAACCTTCGGATGTACCAGTGATACTTGCAAGATCACCGATAAGATTTGGTGACCCAGAGTGGTTTTTCTTCAGTCCTGTTGATTTCAAGTATTCAAACAGTAAAAGGGTTAACAGGAAAACCAAGTGTGGCTTCTGGAAAGCCACCGGAAAAGACCGTAACATCAGGAGCGGCGACACCAACACTCTCATTGCCACCAAGAAGACTCTTGTTTACTACAAAGGCAGTGTTTCCTGCGGTGTCAAGTCCAACTGGGTTATTCACGAATATCATGCTGTTACCTTTCATGAAAGCAAGAGGGCTTTTGTTTTATGCCGCTTGATGAGGAAACCTGGGAAAGCAACTGAAGGTGGAGGTGATCCACTAATCTGTGATGAAGGGGAGCCCAGTACACTCAGGGATTCTGACTATGGAAATCAGGCCACAGCAGAAAGAATTCCATCTGAAGGTTCTTTTACAGGAGTTCCACTAATCTGTGATGAAGGGGGCCCCAGTGAACTCAAGGTTTCTGACTATGGAAATCATTCAACAGCAGAAGGAATTTCATCTGAAAGTTCTTTTACTGGAGTGGAAACAATCTTCCAGACTAGGCCTCAGGCAGATACATACTTCTCCCAAAACCAACAGTCTCCAGAAGAAGAAGCATATTTTCCAAACTATCCATTTAACAATGCCTATTTTAGAAATGAAGATAACTTTATGCATTATGAATTTGAAACTACAAAGGAACAAGAGTTTCTTAATCAAATTTTAGCTGATGAAAGTGTAGTTATTGATGAAGAAAGCATGTCTTTTGTCAATAATACTATCCATTGGGAGACATTGCAAGAGGTAAATTTTGAAAACAATAATTAA 981 0.4139 MGIVGVGFRPTEQELVDFYLKHKLLADDSRVHLIPVIDLCDVEPSDVPVILARSPIRFGDPEWFFFSPVDFKYSNSKRVNRKTKCGFWKATGKDRNIRSGDTNTLIATKKTLVYYKGSVSCGVKSNWVIHEYHAVTFHESKRAFVLCRLMRKPGKATEGGGDPLICDEGEPSTLRDSDYGNQATAERIPSEGSFTGVPLICDEGGPSELKVSDYGNHSTAEGISSESSFTGVETIFQTRPQADTYFSQNQQSPEEEAYFPNYPFNNAYFRNEDNFMHYEFETTKEQEFLNQILADESVVIDEESMSFVNNTIHWETLQEVNFENNN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1260 326 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 4 290 - -
Pvu10g1260 326 SUPERFAMILY NAC domain 4 152 IPR036093 GO:0003677|GO:0006355
Pvu10g1260 326 MobiDBLite consensus disorder prediction 155 178 - -
Pvu10g1260 326 Pfam No apical meristem (NAM) protein 4 133 IPR003441 GO:0003677|GO:0006355
Pvu10g1260 326 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 290 - -
Pvu10g1260 326 Gene3D NAC domain 11 157 IPR036093 GO:0003677|GO:0006355
Pvu10g1260 326 ProSiteProfiles NAC domain profile. 2 152 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1260 Pvu-Chr10 39125243 39127204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1260 4 159 NAC Transcription Factor Family AT4G35580 46.584 4.03e-41 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu10g1260 NAM 3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1260 - - pvu:PHAVU_010G121000g 677.167