Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1259 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCCGATAGCAGAGAGGAGGAGGAGGAAGAGGAAGCAGCAGAAGAAATCATCACAAGAGAAGATAGCAGCAGGTTGTTACACCAGCACCAGGATGCAGCAGGTTCCAATTTCATCATCAGCAATCATCACCATCATCATCACCACGCAACAAAGCAGCTAGACTTCATGGACTTGACGCTGGGGAGCAGCAAGGATGAGGGGAATTTGCAAGGATCGGGAGGTGGTGCTTCATCGGTGTTTCCTCATCATGCAAGTGGTAGTTCTTCTGCCGATGGAAACGTGAACAGCCTGCAGCAGCCTTCCGAGAAGGAGCACATGTTTGACAAAGTTGTGACACCAAGTGATGTGGGGAAGCTGAACCGATTGGTGATTCCAAAGCAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAGCCAATGAGAAGGGGCTGCTGCTGAATTTTGAGGACAGGAATGGTAAGTTATGGAGGTTCAGGTACTCGTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCCAGCGTGGTGTAGGGGAGTTGTATAGGCATAGGTTGTACATAGATTGGAGGAGAAGGCCTGATCACCATCACCATCATGGCCCTGACCCTTCAACCGCACTCTTCACACCTTTCTTTCTTCCCAATCAGCCTCACTTTATCAGATGGGGTGCCACTGGCAGATTGTACACCCTCCCCTCGCCAAACCCACCACGCCACCATGACCATTTGCAACAACACCTCAATTACAACACCATGTATCATCAACATCATCATCCCTTTCATCACCAATTGCAAGCTGCTGCTGCTGGTGGTGCTGCTGGAGGAAATGGAACTCATCACTACAATTATCATGACATGAGTACTTCAGGATCTGGCTCGGTCTATTACCTCAGGTCAACACCCCAACCAATGCCATTAACTGATCACCAAATCTTGAACACAAGACAGCAACAAGAGGGAGGCAATGTTTCTCATCCTCCTATAATCATTGATTCTGTTCCAGTTGCTCACCATCATCATCACCAACACCATGGTGGCAAGAGTGGTTCTAGTACTAGTACTAGTCCTAGCACTGCAGGAAAAAGACTGAGGCTGTTTGGGGTGAATATGGAATGTGCTTCTTCAACATCAGAACATCCCAACTGCTTCAGCTTATTGTCCTCATCTTCAATGGCACATGTGACAATGGCTAATTCCAATTCACCTCCCTCTTCTTCACTACCGCCTCTACAGCTTTTAAGGGAAGACTCACTTTCATCACCCTCATCAGCGAGGTTTGGGGATCAGAGAGGGGAACCTTCAATGCTTTTTGATCTGGATCCATCTTTGCAATACCGGCAGTGA 1431 0.478 MELMQEVKGYSDSREEEEEEEAAEEIITREDSSRLLHQHQDAAGSNFIISNHHHHHHHATKQLDFMDLTLGSSKDEGNLQGSGGGASSVFPHHASGSSSADGNVNSLQQPSEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLYIDWRRRPDHHHHHGPDPSTALFTPFFLPNQPHFIRWGATGRLYTLPSPNPPRHHDHLQQHLNYNTMYHQHHHPFHHQLQAAAAGGAAGGNGTHHYNYHDMSTSGSGSVYYLRSTPQPMPLTDHQILNTRQQQEGGNVSHPPIIIDSVPVAHHHHHQHHGGKSGSSTSTSPSTAGKRLRLFGVNMECASSTSEHPNCFSLLSSSSMAHVTMANSNSPPSSSLPPLQLLREDSLSSPSSARFGDQRGEPSMLFDLDPSLQYRQ* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1259 476 MobiDBLite consensus disorder prediction 365 388 - -
Pvu10g1259 476 MobiDBLite consensus disorder prediction 424 456 - -
Pvu10g1259 476 Pfam B3 DNA binding domain 117 221 IPR003340 GO:0003677
Pvu10g1259 476 ProSiteProfiles B3 DNA-binding domain profile. 117 222 IPR003340 GO:0003677
Pvu10g1259 476 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 65 425 - -
Pvu10g1259 476 Gene3D - 111 229 IPR015300 -
Pvu10g1259 476 MobiDBLite consensus disorder prediction 424 476 - -
Pvu10g1259 476 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 65 425 IPR044800 GO:0003700
Pvu10g1259 476 MobiDBLite consensus disorder prediction 76 116 - -
Pvu10g1259 476 MobiDBLite consensus disorder prediction 1 32 - -
Pvu10g1259 476 SUPERFAMILY DNA-binding pseudobarrel domain 113 218 IPR015300 -
Pvu10g1259 476 SMART B3_2 117 222 IPR003340 GO:0003677
Pvu10g1259 476 CDD B3_DNA 115 204 IPR003340 GO:0003677
Pvu10g1259 476 MobiDBLite consensus disorder prediction 76 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1259 Pvu-Chr10 39055760 39058494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1259 108 404 RAV Transcription Factor Family AT2G46870 48.322 2.91e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu10g1259 B3 2.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1259 - - gmx:100778733 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1259 10 39055760 39058494 Pvu10g1259 10 39055760 39058494 ECH
Pvu9g2686 9 37260825 37263156 Pvu10g1259 10 39055760 39058494 PCT