Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1257 ATGAAGATTGTAGGATTTGGTTTTCGTCCCACAGAAGTAGAACTTGTAGACTTTTACCTCAAACTCAAGTTGCTTGATGATCCCCGTGCCCACGTCATGACTGAGATAGATCTTTGCAATGTGGCACCTTGGGAAGTACCAGTGATGTTAGCAAAATCAGTAATACCATTCAGTGACCGAGAATGGTTTTTCTTCAGTCCTGTTGATTTCAAGTACTCAAATAGTAAAAGGGTTAACCGGAGAACCAAGAGTGGCTTCTGGAAACCCACTGGAAAAGACCGTAAGATTAGGACCTGGGACACCACCACTGTCATTGGGACCAAGAAGACACTTGTTTTCTGCATTGGTCGTGCTTCCAAAGGTGTCAAGGCCAAGTGGGTTATTCACGAATATCATGCTCTTAATGCTCTTACCTTTCATAAAAACCAGAAGGATTTTGTTTTATGCCGCTTGATAAAGAAACCTGGGAAAACAACTGAAGGAGGAACTGATGCATTGATTTGTGATGAAGGTGAATCCAGTAGAAGCGTGGTTTCTGATTGTGAAAATCAGGCAATAGCAGGACTTCCATCTGGAGGAACTTATACCGGAATGGAAACAGTCTGTGAGGCAACACATCAGGCAGATAAATCCATCTCCCCAAAAGAACCCCCCCTAATTGATATTGAGCAGGATGAAGCATCTTCTTCAAACTTTGCATCTATCAATGCCTATTTTAGAAATGAAAACAACATTATGCAGATTCCATCTGAAACTACCCAGATTCCATCTGAAACTAAGCAGATTCCATCTGAAACTATTCAGATGGAATCTGAAACCAAGCAGATTCCATCTTCTGAAACTATTCCGAAGGATGTCTTGAATTCATTGAATTCATTTTTATTTAACGAGGTTCCATGTGAAGTTACGGAGACTCTATCTGAAGATATGCAGGGTGTATTAACCGAAACTATGCAAGCTATGCAAGCTCTATTATCTGAAGCTAAGCAGGCTCCATTATTTGAAGCTACGCAGCCTCCATATGATACTACGCAGATTTCATCTGAAACTACGCAAACTCCTTATATGCAGGTTCCATTTGAAACTCCGCAAACTCCATCTGAAACTAGTTCTTTTAACCATTCCACTCAATCAAAGTCATTGAAAAGGGCATATTGCGAAAGCCCTTACATAGATGCAGAAGTCTTCCCTAAACTGGATGCTAATATTGGAGATATTTCAATTATGTATACTAAATATCTTAATTCAGATGAATACTATTCATCAAAAAGGTTTAAAACATCATACGATGTTGCACTTGGTGACACATGTCTTCTATTTTCTAACCAAGAAGCAAATCAAGAGAAACAAGAAAGTATATTTCAAGATGATTTCTGGGGAGAGGAGACATCCTCATGTGACTCTACAACAAGTAAACCTTTGGAGATCAATTGTTTTTAA 1440 0.3924 MKIVGFGFRPTEVELVDFYLKLKLLDDPRAHVMTEIDLCNVAPWEVPVMLAKSVIPFSDREWFFFSPVDFKYSNSKRVNRRTKSGFWKPTGKDRKIRTWDTTTVIGTKKTLVFCIGRASKGVKAKWVIHEYHALNALTFHKNQKDFVLCRLIKKPGKTTEGGTDALICDEGESSRSVVSDCENQAIAGLPSGGTYTGMETVCEATHQADKSISPKEPPLIDIEQDEASSSNFASINAYFRNENNIMQIPSETTQIPSETKQIPSETIQMESETKQIPSSETIPKDVLNSLNSFLFNEVPCEVTETLSEDMQGVLTETMQAMQALLSEAKQAPLFEATQPPYDTTQISSETTQTPYMQVPFETPQTPSETSSFNHSTQSKSLKRAYCESPYIDAEVFPKLDANIGDISIMYTKYLNSDEYYSSKRFKTSYDVALGDTCLLFSNQEANQEKQESIFQDDFWGEETSSCDSTTSKPLEINCF* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1257 479 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 387 - -
Pvu10g1257 479 Gene3D NAC domain 11 158 IPR036093 GO:0003677|GO:0006355
Pvu10g1257 479 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 4 387 - -
Pvu10g1257 479 Pfam No apical meristem (NAM) protein 4 132 IPR003441 GO:0003677|GO:0006355
Pvu10g1257 479 ProSiteProfiles NAC domain profile. 2 154 IPR003441 GO:0003677|GO:0006355
Pvu10g1257 479 SUPERFAMILY NAC domain 4 154 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1257 Pvu-Chr10 38996419 38999301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1257 4 161 NAC Transcription Factor Family AT4G35580 47.826 1.34e-38 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu10g1257 NAM 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1257 - - vra:106778154 514.998