Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1252 ATGGCTACATCAGAGGAAACCAATAATGGTGAAGCCCTGCAACTTAAACACGTTGAAGAAGACCACGATGGCTTCCTCTTTGCCATGAACATGGCTTCTACTGTGGTGTACCCTCTTGCTGTTAAGACCGCAAATGAGCTCGGTATCTTTGAGATCATGGCCAAAGCAGGTGAAGGTGCGAAGCTCTCAGCAGAAGAGATTGCAGAAAGAATTGGCATAAAGAATCCAGAAGCACCAACTATGGTGGATCGGATTCTGAGGCTATTGGCTAGTCACTCCATGCTATCTTCATGTCTTGGTGAAGATGGCCAAAATTCTGGCAAGAGGCTCTATAGCCTCACATATGCATCCAAGTGTTTTGTTCCTGATGCTGATGGTGTCTCATTTGGAGCTTCCTTGAACTTGATTCTTGGCAAGGTCTTCTTGGAAAGCTGGACCGAACTGAAAGGATCCATCGTGGAAGGTGGCGTAGCATTCGACAGGGTTCATGGGATGAACGCATTTGAGTATTCAGCTGTTGATCCTAAGTACAATGATGTTTTCAACAAAGCTATGTTCAACATTACCACCATAATGATAAACAGGGTTCTTGAGGTCTACGATGGTTTCAAGAACATTAAGAGGCTTGTGGATGTTGGTGGTGGTCTTGGGAGCAATCTCAAACTAATCACTTCTAAATATCCCAATGTTGAAGGTCTTAATTTTGACTTGCCACATGTCATAGAACATGCCCCTACCTACCCTGGTGTGGAACATGTAGCAGGAGATATGTTTGAGAGTGTTCCCAATGGAGACGCCATTTTTATGAAGTGGATACTTCACGATTGGGGTGATGAACAGTGTGTGAAGTTGCTGAAGAACTGCTACAAAGCTATTCCGAGTGATGGAAAAGTGATTGTTGTGGATTTGATTATTCCTGATTTGCCAGAGAACACAGTTAGTGCGAGGAGTGGTTTCCAAGCTGACATCTTGATGATGGTTTCAAACCCAGGAGGCAAAGAGAGAACCCAAAATGAGTTCATGGAATTGGCATTATCTTCTGGATTCAGTGGCATCAGATTCGTTTGTTCTGTCTCTGGCTTCTGGATTATGGAGTTTTTCAAGTAG 1107 0.4381 MATSEETNNGEALQLKHVEEDHDGFLFAMNMASTVVYPLAVKTANELGIFEIMAKAGEGAKLSAEEIAERIGIKNPEAPTMVDRILRLLASHSMLSSCLGEDGQNSGKRLYSLTYASKCFVPDADGVSFGASLNLILGKVFLESWTELKGSIVEGGVAFDRVHGMNAFEYSAVDPKYNDVFNKAMFNITTIMINRVLEVYDGFKNIKRLVDVGGGLGSNLKLITSKYPNVEGLNFDLPHVIEHAPTYPGVEHVAGDMFESVPNGDAIFMKWILHDWGDEQCVKLLKNCYKAIPSDGKVIVVDLIIPDLPENTVSARSGFQADILMMVSNPGGKERTQNEFMELALSSGFSGIRFVCSVSGFWIMEFFK* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1252 368 Gene3D - 7 119 IPR036388 -
Pvu10g1252 368 Pfam Dimerisation domain 40 90 IPR012967 GO:0046983
Pvu10g1252 368 PANTHER O-METHYLTRANSFERASE 1 368 IPR016461 GO:0008168
Pvu10g1252 368 PIRSF O-mtase 5 368 IPR016461 GO:0008168
Pvu10g1252 368 Gene3D Vaccinia Virus protein VP39 122 368 IPR029063 -
Pvu10g1252 368 SUPERFAMILY "Winged helix" DNA-binding domain 19 123 IPR036390 -
Pvu10g1252 368 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 368 IPR016461 GO:0008168
Pvu10g1252 368 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 368 - -
Pvu10g1252 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 128 366 IPR029063 -
Pvu10g1252 368 Pfam O-methyltransferase domain 145 350 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1252 Pvu-Chr10 38933092 38935310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1252 1 368 Monolignol Biosynthesis Gene Families AT5G54160 49.864 7.44e-133 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1252 K13066 - gmx:100789402 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1252 10 38933092 38935310 Pvu10g1252 10 38933092 38935310 ECH
Pvu9g2672 9 37099947 37103126 Pvu10g1252 10 38933092 38935310 PCT