Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1250 ATGGAGAGGCTCCAAGGACCCCTCAATTCCTGTTTCTTTGGAGACCCCTTGGGTGTGAATTGTTTTGACCAAGTTCTGGTTGATGAAGAAAGCCTGAGACTAGAGGAGGAAGAGCAGCTTCTGATATCAAGTTTGGAGGACAACATGCCTTTCCTTCAGATGCTTCAGAGTGTGGAGTCCCCACAATTTTTCCCTTTGAAAGAGCCAAGCTTTCAAACACTTCTGAGACTGCAGCACATTAAGAAACCGTGGGAGGGAATGACCTATGTTCCAAGAATGGAAGCACAAGTTCAGACAGCATTGGAGCTAGAGAGTTGTGTGACACACGACATGTTGGAGATGCAGTCGCCAGTGAAGTCAGAAAGCAATGAGCTCCAACACCCACTTTCAATTTTGTGTGTTGAGAAAGTGAGCTATGAGTGCAACCAGGAACCCCACAAAGTATCACAATCATGTCCCAAATCTCAGCCAGCAGCCACAAGGGAAAGGAGAAAGAGAAAGAGAACAAGGCCAAGCAAGAACAAGGAAGATGTGGAGAACCAACGCATGACCCACATTGCTGTTGAACGCAACCGGCGACGCCAGATGAATGACCATCTCAGTGTTCTAAGGTCCCTCATGCCTCCTTCCTATATTCAAAGGGGTGACCAAGCCTCAATAATTGGGGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTTGAGGCACAAAAAAGAATGAGAAAGAATGAAGAGGGAGGTGGTTCTTCTTCCACCATGTTGTCTAATGCCCCTCCACCATCATCATCTTCATCACCACATGGCTATGGAATGAGGTCATCAACCAGTGAGGAAGTGAACTGTGGGGATGAGATGAAGGCAGAAAACAAGTCAGAGGCTGCAGACATAAAAGTGACCTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGGAGGCCAGGGCAATTGATAAAGGTCATTGTTGCTCTGGAGGACCTTAGGCTAACCATTCTGCACCTCAACATCACCTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAAGGCTGTAATCTTCGTTCAGCAAGTGACATTGCAGAAGCAGTTCATCATATGTTCAACTTCATTAATGGTAGCTAG 1149 0.4613 MERLQGPLNSCFFGDPLGVNCFDQVLVDEESLRLEEEEQLLISSLEDNMPFLQMLQSVESPQFFPLKEPSFQTLLRLQHIKKPWEGMTYVPRMEAQVQTALELESCVTHDMLEMQSPVKSESNELQHPLSILCVEKVSYECNQEPHKVSQSCPKSQPAATRERRKRKRTRPSKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEGGGSSSTMLSNAPPPSSSSSPHGYGMRSSTSEEVNCGDEMKAENKSEAADIKVTLIQTHVNLKIECQRRPGQLIKVIVALEDLRLTILHLNITSSETSVLYSLNLKIEEGCNLRSASDIAEAVHHMFNFINGS* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1250 382 Pfam Helix-loop-helix DNA-binding domain 181 232 IPR011598 GO:0046983
Pvu10g1250 382 PANTHER TRANSCRIPTION FACTOR BHLH70 19 381 - -
Pvu10g1250 382 PANTHER MAX DIMERIZATION, MAD 19 381 - -
Pvu10g1250 382 Coils Coil 228 248 - -
Pvu10g1250 382 MobiDBLite consensus disorder prediction 242 292 - -
Pvu10g1250 382 SMART finulus 186 237 IPR011598 GO:0046983
Pvu10g1250 382 CDD bHLH_AtFAMA_like 183 256 - -
Pvu10g1250 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 248 IPR036638 GO:0046983
Pvu10g1250 382 MobiDBLite consensus disorder prediction 250 282 - -
Pvu10g1250 382 Gene3D - 171 254 IPR036638 GO:0046983
Pvu10g1250 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 231 IPR011598 GO:0046983
Pvu10g1250 382 MobiDBLite consensus disorder prediction 144 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1250 Pvu-Chr10 38912542 38916099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1250 54 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 39.353 1.40e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu10g1250 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1250 - - gmx:100789928 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1250 10 38912542 38916099 Pvu10g1250 10 38912542 38916099 ECH