Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1247 ATGGCTGAGTTGAGTGGTACGATGCAAGAGCACGGGACGGACAACAATAATCGCTCTGCAGAAGTGGTTCTGTGGGAGAGGTTTCTACCGCGGATGGTGCTTAGAGTGCTGCTTGTGGAAGCTGATCATTCCACTCGACAAATCATCGCCGCGCTTCTTCGCAAATGCAGTTACACAGTTATCGCGGTTCCAGACGGATTAAAGGCATGGGAATTGTTGAAGAAGAAGGCGTCTGAGCTAGATCTTATAATAACTGAAGTGGATCTGCCAGCAATATCTGGATTTGCACTTCTTTCTTTAATCATGGGGCATGAAATTTGTAAAAACATTCCTGTCATAATGATGTCTTCTCATGATTCTGTAAGCATGGTGTTGAAATGCATGCTAAAAGGGGCAGTTGATTTTCTTATAAAACCTATTCGGAGGAATGAACTCGTGAACTTGTGGCAACATGTATGGAGAAGGCACGCTAGTAGCGCTCCTACTCAAAATACAACTTTTTCACCAACAAATCTTAAAACTGCCTCCGAGGATAACTCTGCAAGCAATAAATCCAGTGGTTCTGTGGCTTCCTCTAAGAAAAACAACGAATGCAGTGAGAGAGTAAGTGAGACTCAAGACATGCCCCAGCTGAAAAATTCTAAACAGAAGAAAATTGATTTGGTGAAGCATGAAAAGTTTGCCAGATTTGAAAGTGAATCAGCGAAGATTAATAATGAAACAAGAGATAAATCAATTACAATTGTATCAGACACTGCAAGGTGCGACAAAACTTTTGAATCGACGGATCTAAGGCTAGAACAAGACCATTGCTGTGCTGATACTGAAATTGAGGTTGAAATCTTAAAATATGATTTAGGCATAGGAGATTCTAATATTAGTACTGAGTTGCATGAATGGAGTGATGAACGGGTGAAACCAATTAAAGGAGCTATTGACTTGATTGCTACATTTGGAAATCTTCCAAAGCACCCTGATGAAAACTGTAATCTCAATGGTGGTAATACAACCATGTTTGATGGTGTTACGCAATTGGAACTTTCTTTAAGAAGTGATTTTCCTGGAAGCTCATGTAAACAAGCAAGCGAAGCAACTGAGGAATCTCAAAGATTGAACCATTCACACAACTCTGCATTTTCTTGGTATAGTAATAGTAAATTGGTGCACCCTCTTTTTCAAACACCATCAATTACATCAACTGAAGTAAACAACCCCAGTTGGGATTCTCACGAATCCCATAAATTGTCTCGAACTACTTCTGGAAATTGTTGTCAGTATGGTGGCTCAAATAAAAACCTGGAGAATATGATCAGTACAGTTATTGATCAGTATGGACAAGTTAAGCCAAATTTATCAAACAGTCAATGTGGAATGTTACCTGTTTCAGGGGTTATTTCGGATCTTAAGTCCAAGGGACATGGTAATGTTCTCACTTCTGTGTTCTCCGCACCATGCGGTACTCATCCTGTGTGGAGTTCGAAACCAGTCTGCCAGAACGAGAGTTCTTCCTTTCCCATAAGTACCTCCTCCCAGTCCAATCCGGAAAGTCACAACTCTGACCAATATCATGACTGTTCCAATATTGCTCCTTGTCTTAATCAAAATGTAAAGGAAGACACTGATTTGGATCAGGCAAGGCATGATTCTCCTGCTGCTGATCAGAGTACTGGTAACAGTTTATGCCATGATACTTCATATCATGTCAATAGTAGTGCTTATGGAAGCATGGACAGTGGAAATGATGGGCATGCTACTTCAGCTATAGTATCCAAGAACAACCCAGAAGGTTTCAGTGATAGTGTTTGTCATAATTATGATGGGTCTCGAGCCACATATTCTCATCGCACTAGTCAAAGAGAAGCAGCTCTAACCAAGTTTCGACTGAAGCGGAAAGAGCGATGCTTCGAGAAAAAGGTTCGATATCAAAGCCGGAAGAGACTGGCAGAACAGCGGCCTCGGGTCAAAGGGCAGTTTGTACGCCAAGTACACAATGATCATCCAGTTGCTGATGCTGGTGGTGATTCATAA 2028 0.4132 MAELSGTMQEHGTDNNNRSAEVVLWERFLPRMVLRVLLVEADHSTRQIIAALLRKCSYTVIAVPDGLKAWELLKKKASELDLIITEVDLPAISGFALLSLIMGHEICKNIPVIMMSSHDSVSMVLKCMLKGAVDFLIKPIRRNELVNLWQHVWRRHASSAPTQNTTFSPTNLKTASEDNSASNKSSGSVASSKKNNECSERVSETQDMPQLKNSKQKKIDLVKHEKFARFESESAKINNETRDKSITIVSDTARCDKTFESTDLRLEQDHCCADTEIEVEILKYDLGIGDSNISTELHEWSDERVKPIKGAIDLIATFGNLPKHPDENCNLNGGNTTMFDGVTQLELSLRSDFPGSSCKQASEATEESQRLNHSHNSAFSWYSNSKLVHPLFQTPSITSTEVNNPSWDSHESHKLSRTTSGNCCQYGGSNKNLENMISTVIDQYGQVKPNLSNSQCGMLPVSGVISDLKSKGHGNVLTSVFSAPCGTHPVWSSKPVCQNESSSFPISTSSQSNPESHNSDQYHDCSNIAPCLNQNVKEDTDLDQARHDSPAADQSTGNSLCHDTSYHVNSSAYGSMDSGNDGHATSAIVSKNNPEGFSDSVCHNYDGSRATYSHRTSQREAALTKFRLKRKERCFEKKVRYQSRKRLAEQRPRVKGQFVRQVHNDHPVADAGGDS* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1247 675 ProSiteProfiles Response regulatory domain profile. 35 153 IPR001789 GO:0000160
Pvu10g1247 675 MobiDBLite consensus disorder prediction 645 660 - -
Pvu10g1247 675 CDD psREC_PRR 36 139 - -
Pvu10g1247 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 201 671 IPR045279 GO:0009736
Pvu10g1247 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 200 IPR045279 GO:0009736
Pvu10g1247 675 Pfam Response regulator receiver domain 36 147 IPR001789 GO:0000160
Pvu10g1247 675 Pfam CCT motif 619 661 IPR010402 GO:0005515
Pvu10g1247 675 PANTHER PRR RESPONSE REGULATOR 201 671 - -
Pvu10g1247 675 PANTHER PRR RESPONSE REGULATOR 16 200 - -
Pvu10g1247 675 ProSiteProfiles CCT domain profile. 619 661 IPR010402 GO:0005515
Pvu10g1247 675 Gene3D - 32 272 - -
Pvu10g1247 675 SUPERFAMILY CheY-like 34 161 IPR011006 -
Pvu10g1247 675 SMART REC_2 34 149 IPR001789 GO:0000160
Pvu10g1247 675 MobiDBLite consensus disorder prediction 502 524 - -
Pvu10g1247 675 MobiDBLite consensus disorder prediction 645 675 - -
Pvu10g1247 675 MobiDBLite consensus disorder prediction 160 210 - -
Pvu10g1247 675 MobiDBLite consensus disorder prediction 160 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1247 Pvu-Chr10 38861757 38867391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1247 582 663 Response Regulator Gene Family AT5G24470 56.098 1.01e-20 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Pvu10g1247 Response_reg 2.6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1247 K12130 - gmx:100791698 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1247 10 38861757 38867391 Pvu10g1247 10 38861757 38867391 ECH
Pvu9g2667 9 37064343 37070740 Pvu10g1247 10 38861757 38867391 PCT