Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1245 ATGCCACACACCATTCACACCTTTGTTACACCCTCTTCTTTTTCATCTTCTTCTTCTTCTTCTTTGCTACCCTTCAAACTGTACAAACCGCAAGTGAAACGATTCGTTTTACATTTCGGGCTTCCAAGGCGTTCCCGTACATCTCTAGAACCTTCTTCATCGTCTTCTTCTTTCTCTCCGCTGAGGAAAACTAGGGAGGTGGTTGAAGAAAGGATTTATGGAGAAGAATCTGTTTACCCTAAAAAAGGTGATGTTTTTGGGGGCGAAGAAGATAACGAAAAGCTTGGAAAATCGTGTGAAGTGTACGTGTGCAACCTCCCCAGAAGCTGTGATGCAGCTTACTTGCTTGACATGTTCAGGCCATATGGGACCATTCTAGCTGTGGAGGTTTGTCGGGATGATGAGAGTAATGAAAGTAAGGGGTGTGGTTACGTGACACTGGGATCTATGTACTCAGCAAGAAGTGCAGTTGCTACGTTGGATGGATCAGATGTTGGTGGGCGCGAAATGAGGGTTAGATTTTCAATTGAGGTGAATTCTAAAAGGAGGGGTTTTAATAAAGTGAACTCTTCCATCAAGAGAATCTTATACTATGAATCTTCTCATAAGTTGTATGTTGGCAATCTTCCTAAGAACATCAGACCTGAACTGTTGAGAGATCTGTTTAGCAGATTTGGAAATATAGTTAGTCTTAGAGTACTGTTTGATTTTAAACAAGGGAAAAACCGAGCCTATGCCTTTCTCTCCTTTCAATCAGAGGCGGAACGTGATGCAGCAATGTCTCTCAATGGAACAGAATTCTATGGTCGAACACTAATAGTTAAAGAGGGTGTTGAGAGGACCGAACCTTTAACTGAAGCTTCATTGTCTGCATAA 876 0.4201 MPHTIHTFVTPSSFSSSSSSSLLPFKLYKPQVKRFVLHFGLPRRSRTSLEPSSSSSSFSPLRKTREVVEERIYGEESVYPKKGDVFGGEEDNEKLGKSCEVYVCNLPRSCDAAYLLDMFRPYGTILAVEVCRDDESNESKGCGYVTLGSMYSARSAVATLDGSDVGGREMRVRFSIEVNSKRRGFNKVNSSIKRILYYESSHKLYVGNLPKNIRPELLRDLFSRFGNIVSLRVLFDFKQGKNRAYAFLSFQSEAERDAAMSLNGTEFYGRTLIVKEGVERTEPLTEASLSA* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1245 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 177 IPR000504 GO:0003723
Pvu10g1245 291 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 11 282 - -
Pvu10g1245 291 CDD RRM_SF 204 275 - -
Pvu10g1245 291 PANTHER OS02G0815200 PROTEIN 11 282 - -
Pvu10g1245 291 Gene3D - 183 283 IPR012677 -
Pvu10g1245 291 Gene3D - 43 182 IPR012677 -
Pvu10g1245 291 SUPERFAMILY RNA-binding domain, RBD 199 281 IPR035979 GO:0003676
Pvu10g1245 291 SUPERFAMILY RNA-binding domain, RBD 93 186 IPR035979 GO:0003676
Pvu10g1245 291 SMART rrm1_1 203 275 IPR000504 GO:0003723
Pvu10g1245 291 SMART rrm1_1 100 173 IPR000504 GO:0003723
Pvu10g1245 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 171 IPR000504 GO:0003723
Pvu10g1245 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 272 IPR000504 GO:0003723
Pvu10g1245 291 CDD RRM_SF 101 173 - -
Pvu10g1245 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 279 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1245 Pvu-Chr10 38843458 38845922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1245 101 282 Eukaryotic Initiation Factors Gene Family AT2G36660 32.787 4.85e-19 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1245 - - vra:106780336 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1245 10 38843458 38845922 Pvu9g2664 9 37054907 37057045 PCT