Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1242 ATGGGGGGTGGTAACATCAATTCAAGTGAATACAATGATACAACTGCAACCAAAATCTTTGTTGGAGGCTTAGCTTGGGAGACTCAAAGGGACACAGTGAGAAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTTATCACAGATAAGAACACTGGAAGATCCAAGGGTTATGGTTTTATCACATTCAAGGATCCAGAGGCAGCAAAGCAAGCATGTAAAAATCCCTATCCAATAATTGATGGAAGGAAAACAAATTGCAATATTGCATCTATTGGAGCAAACAAGAATCGCAGGCAGGCTCCACAACATGGTCGGTTTGGAGCAGCACCTGGTTTGTTGGCTTCACCTGTTTATCATGATCCTTCCTCTACATATCTCCATCAAAACAATGTGCAATACACATTTCCTGATCCAACTTTTGGTTTTACCAGATATATTCAACATTCACATGACATGATGTACCCCATGAACTGTTATGGAATACTTGGAGGGCAACAGTTCTCAACTTACTACCCCTACATTAGGCCATCAGAACCTATAGGTTTGGTCCATAACACTTACCCTTTTTCTGCTCAGTATGCACACATTAGCCAAGCTCAAGGTTTTGGAGTCCATTATCCCCAAATGATGCAATCTCCCATTATTCCTAGGCACTATGGCTCACCTGGTATCCTTAGATTTCCTTCTTCAATGGAAATGCCAACAACTATGAGTGCAGATTGCATTAAAAGGAAGAATCATGTAACAGTTACAACAACAAAAAGAGAGGCACTAAGAACATGTGCAGATGCTTCACAAACCACTGAAATAACTTCTGAACAAGATTCTTCAGCTGAATCTTCAAATAAATAA 861 0.4019 MGGGNINSSEYNDTTATKIFVGGLAWETQRDTVRRYFEQFGEILEAVVITDKNTGRSKGYGFITFKDPEAAKQACKNPYPIIDGRKTNCNIASIGANKNRRQAPQHGRFGAAPGLLASPVYHDPSSTYLHQNNVQYTFPDPTFGFTRYIQHSHDMMYPMNCYGILGGQQFSTYYPYIRPSEPIGLVHNTYPFSAQYAHISQAQGFGVHYPQMMQSPIIPRHYGSPGILRFPSSMEMPTTMSADCIKRKNHVTVTTTKREALRTCADASQTTEITSEQDSSAESSNK* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1242 286 Gene3D - 5 111 IPR012677 -
Pvu10g1242 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Pvu10g1242 286 CDD RRM_RBM24_RBM38_like 17 92 - -
Pvu10g1242 286 PANTHER - 4 251 - -
Pvu10g1242 286 SUPERFAMILY RNA-binding domain, RBD 10 109 IPR035979 GO:0003676
Pvu10g1242 286 SMART rrm1_1 18 90 IPR000504 GO:0003723
Pvu10g1242 286 PANTHER BOULE-RELATED 4 251 IPR037366 GO:0003729
Pvu10g1242 286 MobiDBLite consensus disorder prediction 267 286 - -
Pvu10g1242 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 76 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1242 Pvu-Chr10 38808435 38809793 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1242 6 93 C2H2 Transcription Factor Family AT2G19380 42.045 1.02e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1242 - - pvu:PHAVU_004G102100g 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1242 10 38808435 38809793 Pvu10g1242 10 38808435 38809793 ECH