Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1237 ATGCCGGAAAACATGAGCATATCTGTCAATGGACAATCTCAAGTCCCACCTGGCTTCAGGTTCCATCCTACTGAAGAGGAGCTTCTTCAGTACTACTTGAGGAAAAAGGTCTCTTACGAGAAGATTGACCTCGATGTCATTCGTGATGTTGATCTCAACAAGCTCGAGCCATGGGATATTCAAGAGAAATGCAAAATAGGAACCACTCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACAGGAACTCGCACCAATCGCGCCACTGCTGCGGGATTCTGGAAGGCCACTGGCCGTGACAAAGTCATATACAGCAACGGAAAGAGGATTGGAATGAGAAAGACTCTGGTTTTCTACAAAGGAAGAGCCCCACATGGCCAGAAATCTGACTGGATCATGCATGAATACAGACTAGACGACAACACCACCAGCGACACCAATATTGTGTCGAATGTGATGGGGGACGGTGGTCAGGAAGAAGGGTGGGTGGTGTGTAGGATATTCAAGAAGAAGAACAACCTGAAAACCCTAGACAGCCCATTAGGTTCGGGAGAAGGTAGAAGGAGCCAGTTGTTCGAGTCGTGCGACGAGGGAGCTTTGGAGCAGATACTTCAGCAAATGGGAAGGGGTTGCAAGGAAGAGAGCAGCTACGAGGGAAACTACAGCTATGGAAGGTTGGGAAGGGGTTACGAGACGGGTGTGAACAATGACAGGTTCATGAAGCTGCCAAGCCTAGAGAGCCCAAAATCTAGAAGCATGGAGAGTCAGCAGAACAACAACAACAACAGTAATAATGGTGATAACAACAACGAGCAGAATAATAATGGGTACCATCCCATTATTCCAGTAGACATGGGGACGGACAATGAAGGGTCATTCGCAACCCACCAGGTGAGTGGTGGTGACCCCAACATGGTTCATCCAATGGAGGCATCATCAGGTGGTGGAGGCCTCACCAACTGGGCTGCGCTGGACCGTTTGGTTGCCTCTCAGCTCAATGGCCAAACCGAGGCCTCTAGGCACTTCGCATGCTTCAACGACCCCACCATCGCCTACTGCACTACCCACCACGATCTACCATTGCCCACCCTCAGATCCTCATCAAATCCTTCATCAACCTCCACCCTCACCAGACCTTCCGCTGCATCCGCATACATCAACCCCGCACACGACTTCACCAGCGAGATTGACCTCTGGAACTTCACTCGCTCCACCTCCGAACCTCTCTGCCATGTCTCCAACACCTCACTCTAG 1269 0.5051 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTSDTNIVSNVMGDGGQEEGWVVCRIFKKKNNLKTLDSPLGSGEGRRSQLFESCDEGALEQILQQMGRGCKEESSYEGNYSYGRLGRGYETGVNNDRFMKLPSLESPKSRSMESQQNNNNNSNNGDNNNEQNNNGYHPIIPVDMGTDNEGSFATHQVSGGDPNMVHPMEASSGGGGLTNWAALDRLVASQLNGQTEASRHFACFNDPTIAYCTTHHDLPLPTLRSSSNPSSTSTLTRPSAASAYINPAHDFTSEIDLWNFTRSTSEPLCHVSNTSL* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1237 422 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Pvu10g1237 422 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Pvu10g1237 422 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Pvu10g1237 422 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 364 - -
Pvu10g1237 422 MobiDBLite consensus disorder prediction 253 282 - -
Pvu10g1237 422 MobiDBLite consensus disorder prediction 245 291 - -
Pvu10g1237 422 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 8 364 - -
Pvu10g1237 422 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1237 Pvu-Chr10 38725057 38727208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1237 1 421 NAC Transcription Factor Family AT2G46770 54.338 1.38e-141 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu10g1237 NAM 3.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1237 - - gmx:100793308 678.322