Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1236 ATGTCTCAACAAAGGCAAGCTCAGATGGTAGGTGGTAACAACCAGGAGCAATATAATGACACAACTTTTACCAAAATCTTTGTTGGAGGGCTGGCTTGGGAGACTCAAAGGGACACAATGAGGAGGTACTTTGAGCAATTTGGAGAGATCTTGGAGGCTGTTGTGATCACAGACAAGAACACTGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAGGGATCCTGAGGCGGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGGAGGAGGGCTAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAACCGACCAGCAACTTTTCAGCATGGTGCAGGACGGTTCAGGCCTCCACCTGTACTGGTGACATCACCTGCTTATCATGGTTCTTCATCTACTACAACATTTTCCCATCAACCCCCTAGGCAATACACATTTCCTTATTCGGCTTACGGATATTCTGGATATTCACAAGACACCTTGTATCCTACGAACTACTATAATGTCTATGGAGTTCAGCAATTTTCAGCTTACTACCCATCTGCTGGAGATTCTGGAGCAGTAGGGTTGATCCATAATATCTATCCCTTTTATGGTCAATATGCACAGAGTATTCAGGCTCATGGTTTTGGGGTTCAATACCCACAAATGGCACAGTTTCCATTTTTGCCTCAGCATTATGGCTCCACTGGGATATTGTCATATCCTTCTTCAGTAGCAGTGCCAACTACTAGTGCAGTGACAGGAACTGCAACCACAATTACAACACCAACAACATCAACAGGTGTGACAGCAACAGTGGCTGGTAGTTCACAAGCCTCACAAGCAGCTTCTGAACAAAATTCTACATCTACAAAGATGCAGAACATGCAAGGCTAA 888 0.4482 MSQQRQAQMVGGNNQEQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPATFQHGAGRFRPPPVLVTSPAYHGSSSTTTFSHQPPRQYTFPYSAYGYSGYSQDTLYPTNYYNVYGVQQFSAYYPSAGDSGAVGLIHNIYPFYGQYAQSIQAHGFGVQYPQMAQFPFLPQHYGSTGILSYPSSVAVPTTSAVTGTATTITTPTTSTGVTATVAGSSQASQAASEQNSTSTKMQNMQG* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1236 295 MobiDBLite consensus disorder prediction 273 295 - -
Pvu10g1236 295 PANTHER BOULE-RELATED 1 273 IPR037366 GO:0003729
Pvu10g1236 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Pvu10g1236 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Pvu10g1236 295 SUPERFAMILY RNA-binding domain, RBD 12 109 IPR035979 GO:0003676
Pvu10g1236 295 SMART rrm1_1 25 97 IPR000504 GO:0003723
Pvu10g1236 295 PANTHER - 1 273 - -
Pvu10g1236 295 CDD RRM_RBM24_RBM38_like 24 99 - -
Pvu10g1236 295 Gene3D - 1 117 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1236 Pvu-Chr10 38673796 38676511 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1236 20 100 C2H2 Transcription Factor Family AT2G19380 43.210 8.34e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1236 - - gmx:100788899 473.396