Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1229 ATGGAGGAACTAATCATGTCTCCTTCCTCATCCTCCTCTTTGGTCTCTCAACCCCAAGAAAACCCAATCCCAACACCATCCCTTCAACAAAAACTTCAATTTCTCCTCCAAAGCCAACCCGATTGGTGGGTCTACGCCATTTTCTGGCAGGCTTCACACGACGACAATGGCAACCTTTACCTGTCCTTCGGAGAAGGTCATTTCCAAGGCACCAAAGAAACTTCTCCAAAATTCCCAACCCCCATTTCCACCAAGAAATTCACCAAAACCCCCACAACAGAAAACATCAACGACGCCGAGTGGTTCTACGTCATGTCGTTGACTCGCACGTTTACCGTCACCAATTCTTCTTCTTCAACCCCTCCCACTCCTTCTTCACTCCTTGGCAAGTCTTTTGCTTTGGGATCCGTGCTGTGGCTGAACAACAAGCAGGAGCTCCAATTCTACAAGTGCGACAGATCCAACGAGGCTCACTTGCACGGGATCCAAACGTTGATCTCCATCCCCACACAAGACGGCGTCGTCGAAATGGGATCCTACGACAGCATCAAACAAAACTGGAACCTCGTCCAGCACGTGAAGTCCCTCTTCCAACCCCTCCCAGATCCGCTTCCCGTTCAAGTCCTCAACGACAATACCATCTCTTTCGCTGACATCGGCATCGTCGCCGGAATCCAAGAAACCAAAAAGCGAAAACAAGCCCAAACACCACCCAACAACAAAAAAGACATCTACGTAGACTCCGAACACTCTGATTCGGATTGTCCAATGTTGCCAACCACCACAACCCCGACAGCCTCGGAGCCCAAAAAACGAGGCAGAAAACCTGTTATCGGCCGCGAGACACCAATGAACCACGTGGAGGCTGAGCGGCAACGGAGAGAGAAGCTGAACCACCGCTTCTACGCGCTACGCGCGGTGGTTCCGAACGTTTCGAGGATGGACAAGGCTTCGTTGCTCTCCGATGCTGTCACTTACATCAACGAGCTCAAAGCGAAGATTGAGTACTTGGAATCGCAGCAACAACGAGAAGGTAATAAAAGGGTCAAGACAGAAATGATGGATACAATGGATAATCAGAGCACCACCACCACCACCACCTCCACCATCGTAGACCAAAGTAGGCCTGGTGCTGGAGGCCCGTGCCCATTTGGTCTCGAGATCGATGTGAAGATCATGGGGCCCGATGCCATGGTGAGGGTGCAATCCGAAAATGCGAACCACCCCGGGGCGAGGCTAATGGGTGCATTGAGAGACCTAGAGTTTCAGGTTCATCATGCTAGCATGTCGTGCGTTAACGATCTCATGCTTCAGGACGTGGTGATTAATGTCCCTAATGGAATGAGGAGCGAAGAGGGTCTTAAATCTGCCATTCTCATGAGGTTGGATCAGTGA 1395 0.509 MEELIMSPSSSSSLVSQPQENPIPTPSLQQKLQFLLQSQPDWWVYAIFWQASHDDNGNLYLSFGEGHFQGTKETSPKFPTPISTKKFTKTPTTENINDAEWFYVMSLTRTFTVTNSSSSTPPTPSSLLGKSFALGSVLWLNNKQELQFYKCDRSNEAHLHGIQTLISIPTQDGVVEMGSYDSIKQNWNLVQHVKSLFQPLPDPLPVQVLNDNTISFADIGIVAGIQETKKRKQAQTPPNNKKDIYVDSEHSDSDCPMLPTTTTPTASEPKKRGRKPVIGRETPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVTYINELKAKIEYLESQQQREGNKRVKTEMMDTMDNQSTTTTTTSTIVDQSRPGAGGPCPFGLEIDVKIMGPDAMVRVQSENANHPGARLMGALRDLEFQVHHASMSCVNDLMLQDVVINVPNGMRSEEGLKSAILMRLDQ* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1229 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 343 IPR036638 GO:0046983
Pvu10g1229 464 Coils Coil 327 347 - -
Pvu10g1229 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 281 330 IPR011598 GO:0046983
Pvu10g1229 464 CDD bHLH_AtAIB_like 279 355 - -
Pvu10g1229 464 MobiDBLite consensus disorder prediction 228 292 - -
Pvu10g1229 464 MobiDBLite consensus disorder prediction 358 374 - -
Pvu10g1229 464 Gene3D - 279 346 IPR036638 GO:0046983
Pvu10g1229 464 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 28 197 IPR025610 -
Pvu10g1229 464 MobiDBLite consensus disorder prediction 358 378 - -
Pvu10g1229 464 MobiDBLite consensus disorder prediction 1 24 - -
Pvu10g1229 464 MobiDBLite consensus disorder prediction 268 292 - -
Pvu10g1229 464 PANTHER MYC 1 462 IPR045084 GO:0003700|GO:0006355
Pvu10g1229 464 PANTHER TRANSCRIPTION FACTOR BHLH14 1 462 - -
Pvu10g1229 464 SMART finulus 287 336 IPR011598 GO:0046983
Pvu10g1229 464 Pfam Helix-loop-helix DNA-binding domain 285 330 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1229 Pvu-Chr10 38564568 38566513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1229 24 462 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 36.444 9.60e-72 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu10g1229 bHLH-MYC_N 1.3e-45 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1229 - K13422 var:108347008 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1229 10 38564568 38566513 Pvu10g1229 10 38564568 38566513 ECH