Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1225 ATGGGTATGGGGGAGAAGAGTCCCAGGAGTTTTCAATTGCACCATCGTGATGGGAAGAAGCAGGAGTTCAGAGGGGTACCAAAAGGGTGCATGGCGATCAAAGTTGGTCAAGGAGAAGAGCAACAAAGGTTCGTGGTGCCTGTCATGTACATCAACCACCCTCTCTTCATGCAGCTTCTCAAGGAGGCAGAGGAAGAATACGGTTTCGACCAGAAGGGAACCATAACCATCCCTTGCCATGTTGAGGAATTCAGAAACGTTCGGGGCTTGATTGACAGGGACAAGTCCCTTCACCACCACCACCATGTTGGTTGCTTTGGCTTCTGA 327 0.5046 MGMGEKSPRSFQLHHRDGKKQEFRGVPKGCMAIKVGQGEEQQRFVVPVMYINHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRNVRGLIDRDKSLHHHHHVGCFGF* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1225 108 Pfam Auxin responsive protein 21 87 IPR003676 GO:0009733
Pvu10g1225 108 MobiDBLite consensus disorder prediction 1 20 - -
Pvu10g1225 108 PANTHER SMALL AUXIN-UP RNA-RELATED 18 102 - -
Pvu10g1225 108 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 18 102 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1225 Pvu-Chr10 38518038 38518967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1225 26 104 Calmodulin-binding Proteins AT5G20810 46.250 1.11e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1225 K14488 - gmx:111188139 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1225 10 38518038 38518967 Pvu10g1225 10 38518038 38518967 ECH