Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1222 ATGAGTTTTGGATATAAAGCCATCAATTGGGGACTTCACTCTGACCACCATGATAGGAACTCCAATAAGCAAAAGCCAATTGATACTTGCATATCACAAAACACACACACACACTCTCTCTCAAAAAAAAATCTCCTATCACCTAACTCACCTATCCTCAACTCAAAGCCCTTTAGTCTCAGCAAGCAGCAAGTGAGAGTGTTACACAACATGGAATATACTTATTCAGCAGAGGCAGAAACTTACACCAGTAGCAGTACCACCCCATCAAGTGCCATGAGATCAAAGAAGAAAGCCAACAACAACACAAGAAGGTTCAGTGATGATCAAATCAAATCATTGGAAACCATGTTTGAGACAGAGTCAAGGCTAGAGCCTAGAAAGAAGTTGCAGCTGGCAAGAGATCTTGGATTGCAGCCAAGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTAGGTGGAAGTCAAAGCAACTGGAGAGAGACTATGGTATACTACAATCCAATTACAACAGTTTGGCCTCACGTTTTGATGCTCTTAAGAAGGAAAAGCAAACATTACTAATTCAGTTGCAGAAGCTGAATCATCTAATGCAGAAGCCACTGGAACCAGGTCAGAGTCGCACACAAGATGAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATGTGAACATGAGGAAAAGCCAAGCCCAACAATGGAAAGATCAGAGCATGTGCACGGTGTTCTGTCTGATGATGACGCTAGCATAAAGGTAGAAGACTTTGGCCTAGAAGATGAACATGATCTCATGAACTTTGTTGAGCATGCTGATGACTCCTTGACTTCACCGGAAGATTGGAGTGCTTTTGAATCCAATGGTCTCTTAGGCCAAACGACCAGTGATTACCAATGGTGGGACTTCTGGTCCTGA 930 0.429 MSFGYKAINWGLHSDHHDRNSNKQKPIDTCISQNTHTHSLSKKNLLSPNSPILNSKPFSLSKQQVRVLHNMEYTYSAEAETYTSSSTTPSSAMRSKKKANNNTRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFDALKKEKQTLLIQLQKLNHLMQKPLEPGQSRTQDEAANSMDSESENGGTMKCEHEEKPSPTMERSEHVHGVLSDDDASIKVEDFGLEDEHDLMNFVEHADDSLTSPEDWSAFESNGLLGQTTSDYQWWDFWS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1222 309 SMART HOX_1 100 161 IPR001356 GO:0003677
Pvu10g1222 309 PRINTS Lambda-repressor HTH signature 128 137 IPR000047 GO:0003677
Pvu10g1222 309 PRINTS Lambda-repressor HTH signature 137 153 IPR000047 GO:0003677
Pvu10g1222 309 Pfam Homeobox associated leucine zipper 157 199 IPR003106 GO:0006355|GO:0043565
Pvu10g1222 309 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 78 309 IPR045224 GO:0003700
Pvu10g1222 309 Pfam Homeodomain 104 155 IPR001356 GO:0003677
Pvu10g1222 309 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 78 309 - -
Pvu10g1222 309 MobiDBLite consensus disorder prediction 202 223 - -
Pvu10g1222 309 Gene3D - 87 161 - -
Pvu10g1222 309 CDD homeodomain 104 158 IPR001356 GO:0003677
Pvu10g1222 309 MobiDBLite consensus disorder prediction 81 104 - -
Pvu10g1222 309 MobiDBLite consensus disorder prediction 201 250 - -
Pvu10g1222 309 SUPERFAMILY Homeodomain-like 82 159 IPR009057 -
Pvu10g1222 309 MobiDBLite consensus disorder prediction 81 97 - -
Pvu10g1222 309 MobiDBLite consensus disorder prediction 224 250 - -
Pvu10g1222 309 ProSiteProfiles 'Homeobox' domain profile. 97 157 IPR001356 GO:0003677
Pvu10g1222 309 ProSitePatterns 'Homeobox' domain signature. 132 155 IPR017970 GO:0000981|GO:0006355
Pvu10g1222 309 Coils Coil 177 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1222 Pvu-Chr10 38454753 38456097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1222 86 309 Homeobox Transcription Factor Family AT2G46680 51.220 4.07e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu10g1222 Homeodomain 4.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1222 K09338 - gmx:100797862 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1222 10 38454753 38456097 Pvu10g1222 10 38454753 38456097 ECH
Pvu6g1215 6 23120454 23121800 Pvu10g1222 10 38454753 38456097 PCT