Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1213 ATGATGATGGTTTTAGATCTTTTATCTTCTAATGCTGCTGGAAATCTCATTTCTCAAACTTTAGAGATCATTTCTGAGTTTCTAGTTAATGTTAACGATGTTCTTGTGAAAAAGGATAGTTTTAAAGAACTTGGTGCTTACTTGGATAGAATTAAGCCTATCTTAGAAGAGTTGAAGAAAGGAAAAGTCAGTGATTCTGAGTCATTCAACCAAGCCATTGAGACCATGAACAAAGAAATTAAAGATGCGAAGCTACTAGCTCTAGAGTGCAGCAAGAAGAGCAAGGTTTATCTGTTAGTGAACTCCAGGTCCATTGCTAAGAAGTTAGAGGATCACTCAAAACGGCTGAGTTGGGCACTTAATCTTATTCCTTTAGCCACAACAGGTCTTTCTTCAGGAATTGTTGAAGATATTGAAAAGCTATGTGACAGCATGCAGACATCTGGATTTAAGGCAGCTCAAGATGAAGAAGCCATTTTAGAGAAAATTTACTCAGGGATTAGGGAAAACAATGTTGATCGTTCCTATGCAAACAACTTGCTACTTCACATTGCTGAGACTGTTGGGATTAGGAATGAGAGGTCAACAATAAAGTTGGAACTTGAAGAGTTTAAGAGTGAAATTGAAAAGGCACGCGTTAGGAAGGAGTTAGCTGAAGCTATGCAAATGGATCAAATCATTGCTTTGTTGGAAAGGGCTGATGTAGCTTCATCACCTAGGGACAAGGAACTCAAATACTTTGCCAAACGCCGATCTTTGGGTAGTCAAATATTGGAGCCTTTGCAGTCATTTTATTGCACCATCACCCAGGATGTTATGGTGGATCCTGTTGAAATTTCATCAGGACAGACATTTGAGAGAAGTGCCATAGAAAAGTGGTTTGCAGAAGGAAATAAATTGTGCCCCTTGACCTTGATTCCCCTAGACACATCAATTTTGAGACCTAACAAACAGCTGAAACAATCCATACAAGAGTGGAAGGATAGAAATATAATGATTACAATTGCTACATTGAAAGAAAAAATCCTGTCTGGGAATGATGAGGAAGTGCTGCTTGATCTGAAAAATCTTCAGAATTTGTGTGAAGAAAAAGAACAGCACAGGGAATGGGTTATTCTGGAGAATTACATCCCAACTCTCATCCAAATTCTATCAAGAAATCGTGATATAAAAAAACATTCTCTTGTCATCCTTGGCATGCTGGCAAAGGATAGTGAAGAAGCTAAGGTAAAAATTTCAACGGCTGATGGTGCAATTGAATCAATTGTCCGGTCTCTTGCACGCAGTACAGAGGTAAGAAAAATAGCAGTGGCGTTACTGATTGAATTGTCCAAATATGATTTGGCACGAGAACACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGTGGAGATGACAATCAAGCTGCTAGAGATGCAACGGAGCTATTGGAGAATCTTGCATACTCTGATCAGAATGTTATACAGATGGCAAAAGCAAATTATTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGAAGATGTAAAGATGATTATGGCAAAAAATTTAGTAGAAATGGAGTTAACTGACCATAATAGAGAGTCCTTGTTTGATGGTGGTGTACTGGTTCCTCTTCTTCACATGTTCTCACAAAATGATGTTCTGGTGAAAGCAGAAGCTATTAAAGCTCTTAAGAATTTATCCAATTCAAAGAAAACTGGACAGGAAATGATAAGACAGGGGGCTGCACGGCCGCTACTTAACCTCCTTTTCAATCAAAGCATACCCACTACAAGTTTGTGGGGAGATCTATCAACCATAATCGTGCAACTTGCTGCATCAACTATCTCTCAGGACGCTCAAACACCTGTTTTATTACTCGATTCTGATGATGATGTTTTCAATCTCTTCAATTTAGTTAGTGTCACAGAGCCTGTTGTGCAACAGAACATTATCCAGACCTTTTATGCCTTGTGTCAAACACCCTCGGCTTCGTTTATCAGAACCAAACTGAAAGAGTACCCAGCTGTTCCAAAATTGGTTGAACTGTGTGAGAATGAAAACCAAAACCTACGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTGGAGAATTGTGATGAAGCCATCATACAGGAGTACGTGAACCAGAAATGCATCAATACTCTACTCCGGATCATAAAAACTTCATCTGATGAAGAGGAAATACTTTCTGCCATGGGATTGATATGCTATCTTCCAGAAATTGACCACATAACTCAATGGCTTTTGGATGGTGGGGCGCTGCAAATCATTAAAAATTATGTCCAACAAAGAAGAAATTTAGTTGAGAATGCCATTGGTGCCCTTCGTCGTTTTACTGTTCCAACAAACTTGGAATGGCAAAAAAGTGCAGCTGAAACAGGAATCATAACTGTTTTGGTGCAACTGCTTGAAAATGGAACCACCTTGACAAAACAACGCGTGGCGCAGTGTCTTGCTCAATTTTCTAGAAGCTCATTTATGCTGAGCAGGCCAATACCGAGGCGCAAAGGACTATGGTGCTTCTCAGCTCCTACAGATATTGGCTGCATGGTTCATGGAGGAATATGCTCAGTCAAATCATCATTTTGTCTTTTGGACGCCAACGCAGTGGCACCACTCACAAGGACTCTACAGGAATCTGATCCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTTTTAACATTGATAGAAGATGAAAGACTGCAGAGTGGTAGTGCTGTGCTTGCAGAAGCAAAGGCCATACCACTTATAATCAGATATCTTGGTTCCCCCTCCCCTGGCTTGCTGGAGAAGTCTCTAAATGCTTTGGAAAGGATTTTTCGTCTACCCGAATTCAAACAGATGTATGGACCCTCAGCTCAAATGGCTCTAGTTGATTTGACTCAGAGGGGTAATGGTAGTGTTAGATCCACATCAGCTAGAATATTGGTACATTTGAACGTGCTTCATGATCAATCTTCATTTTTCTAA 2994 0.4005 MMMVLDLLSSNAAGNLISQTLEIISEFLVNVNDVLVKKDSFKELGAYLDRIKPILEELKKGKVSDSESFNQAIETMNKEIKDAKLLALECSKKSKVYLLVNSRSIAKKLEDHSKRLSWALNLIPLATTGLSSGIVEDIEKLCDSMQTSGFKAAQDEEAILEKIYSGIRENNVDRSYANNLLLHIAETVGIRNERSTIKLELEEFKSEIEKARVRKELAEAMQMDQIIALLERADVASSPRDKELKYFAKRRSLGSQILEPLQSFYCTITQDVMVDPVEISSGQTFERSAIEKWFAEGNKLCPLTLIPLDTSILRPNKQLKQSIQEWKDRNIMITIATLKEKILSGNDEEVLLDLKNLQNLCEEKEQHREWVILENYIPTLIQILSRNRDIKKHSLVILGMLAKDSEEAKVKISTADGAIESIVRSLARSTEVRKIAVALLIELSKYDLAREHIGKVQGCILLLVTMSSGDDNQAARDATELLENLAYSDQNVIQMAKANYFKHLLQRLSTGPEDVKMIMAKNLVEMELTDHNRESLFDGGVLVPLLHMFSQNDVLVKAEAIKALKNLSNSKKTGQEMIRQGAARPLLNLLFNQSIPTTSLWGDLSTIIVQLAASTISQDAQTPVLLLDSDDDVFNLFNLVSVTEPVVQQNIIQTFYALCQTPSASFIRTKLKEYPAVPKLVELCENENQNLRASAVKLFSCLVENCDEAIIQEYVNQKCINTLLRIIKTSSDEEEILSAMGLICYLPEIDHITQWLLDGGALQIIKNYVQQRRNLVENAIGALRRFTVPTNLEWQKSAAETGIITVLVQLLENGTTLTKQRVAQCLAQFSRSSFMLSRPIPRRKGLWCFSAPTDIGCMVHGGICSVKSSFCLLDANAVAPLTRTLQESDPGVCEASLDALLTLIEDERLQSGSAVLAEAKAIPLIIRYLGSPSPGLLEKSLNALERIFRLPEFKQMYGPSAQMALVDLTQRGNGSVRSTSARILVHLNVLHDQSSFF* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1213 997 SMART arm_5 446 487 IPR000225 GO:0005515
Pvu10g1213 997 SMART arm_5 706 748 IPR000225 GO:0005515
Pvu10g1213 997 SMART arm_5 529 569 IPR000225 GO:0005515
Pvu10g1213 997 SMART arm_5 407 445 IPR000225 GO:0005515
Pvu10g1213 997 SMART arm_5 570 621 IPR000225 GO:0005515
Pvu10g1213 997 SMART arm_5 865 905 IPR000225 GO:0005515
Pvu10g1213 997 SMART arm_5 364 403 IPR000225 GO:0005515
Pvu10g1213 997 SMART arm_5 909 949 IPR000225 GO:0005515
Pvu10g1213 997 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Pvu10g1213 997 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
Pvu10g1213 997 SUPERFAMILY ARM repeat 334 987 IPR016024 -
Pvu10g1213 997 CDD RING-Ubox_PUB 264 304 IPR045210 -
Pvu10g1213 997 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Pvu10g1213 997 Gene3D - 862 995 IPR011989 -
Pvu10g1213 997 Coils Coil 194 221 - -
Pvu10g1213 997 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 337 IPR013083 -
Pvu10g1213 997 Gene3D - 15 127 IPR036537 GO:0007166
Pvu10g1213 997 ProSiteProfiles RPW8 domain profile. 2 157 IPR008808 -
Pvu10g1213 997 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 997 - -
Pvu10g1213 997 SUPERFAMILY RING/U-box 251 330 - -
Pvu10g1213 997 Gene3D - 338 618 IPR011989 -
Pvu10g1213 997 Gene3D - 624 837 IPR011989 -
Pvu10g1213 997 Pfam Armadillo-like 432 594 IPR006911 -
Pvu10g1213 997 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 997 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1213 Pvu-Chr10 38293673 38300574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1213 262 997 U-box Gene Family AT1G76390 28.608 5.42e-60 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1213 - - gmx:100799969 1591.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1213 10 38293673 38300574 Pvu10g1213 10 38293673 38300574 ECH