Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu10g1210 | ATGAGGCCGATTTTTGCTGGGAACTTGGAGTATGATACTCGTCAATCGGAGCTTGAACGGTTGTTTTCAAAGTATGGAAGGATTGACCGCGTGGATATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCAGAAGAAGCAATTCGAGCACTTGACAATGTTCCATTTGGTCATGAAAAGCGAAGGCTGTCTGTGGAGTGGGCTAGGGGTGAACGTGGACGTCATCGTGATGGATCAAAGGCAAACCAGAGGCCAACAAAAACCTTGTTTGTGATTAACTTTGATCCAATCCGAACTAGAGTTCGTGATATAGAAAAACATTTTGAACCTTATGGAAATGTTCTTCATGTCCGAATTCGAAGGAACTTTGCATTCGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTTTAGAGTGTACAAATATGAGTAAGATCCTGGACAGGGTGGTGTCTGTGGAGTATGCTTTGAGGGATGATGGTGAGAGGGGTGACAATTATGATAGTCCTAGACGAGGAGGTTATGATAGATCACCCAGTCCAGTTTATCACAGGCGTCCGAGCCCCGACTATGGTCGTCCACGCAGTCCTGTCTATGATAGGTATAATGGTGGACCAGACAGACGGGTGAGTCCTGATTATGGCAGGGCCATTCCTGATTATGGCAGGCGCAGGAGTCCTGATTATGGAAAGCCAAGGAGTCCTGATTATGGAAAGCCAAGGAGTCCTGATTATGTAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCTAGGAGTCCTAGTTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGCCCTGATAATGGGAAGCCCAGGAGTCCTGATTATGGGAAGACCAGGAGTCCTGATTATGCGAAGCCCAGGAGTCCTGAATATGGTAGATATCGCAGCCGTTCTCCATTGCGAAGGTCTAGAACGTAA | 984 | 0.4675 | MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGYDRSPSPVYHRRPSPDYGRPRSPVYDRYNGGPDRRVSPDYGRAIPDYGRRRSPDYGKPRSPDYGKPRSPDYVKPRSPGYGKPRSPGYGKPRSPSYGKPRSPGYGKPRSPDNGKPRSPDYGKTRSPDYAKPRSPEYGRYRSRSPLRRSRT* | 328 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu10g1210 | 327 | SMART | rrm1_1 | 92 | 158 | IPR000504 | GO:0003723 | |
Pvu10g1210 | 327 | SMART | rrm1_1 | 3 | 70 | IPR000504 | GO:0003723 | |
Pvu10g1210 | 327 | CDD | RRM2_AtRSp31_like | 92 | 161 | - | - | |
Pvu10g1210 | 327 | MobiDBLite | consensus disorder prediction | 289 | 319 | - | - | |
Pvu10g1210 | 327 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED | 5 | 212 | IPR029537 | GO:0000398|GO:0005681 | |
Pvu10g1210 | 327 | Pfam | Cornifin (SPRR) family | 222 | 312 | - | - | |
Pvu10g1210 | 327 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 74 | IPR000504 | GO:0003723 | |
Pvu10g1210 | 327 | Gene3D | - | 84 | 173 | IPR012677 | - | |
Pvu10g1210 | 327 | Gene3D | - | 1 | 83 | IPR012677 | - | |
Pvu10g1210 | 327 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 93 | 155 | IPR000504 | GO:0003723 | |
Pvu10g1210 | 327 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4 | 61 | IPR000504 | GO:0003723 | |
Pvu10g1210 | 327 | MobiDBLite | consensus disorder prediction | 222 | 247 | - | - | |
Pvu10g1210 | 327 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 5 | 212 | - | - | |
Pvu10g1210 | 327 | MobiDBLite | consensus disorder prediction | 164 | 327 | - | - | |
Pvu10g1210 | 327 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 165 | IPR035979 | GO:0003676 | |
Pvu10g1210 | 327 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 91 | 162 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu10g1210 | Pvu-Chr10 | 38275979 | 38278963 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu10g1210 | 4 | 164 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 23.626 | 3.90e-09 | 55.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu10g1210 | K12893 | - | gmx:100797709 | 478.018 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pvu10g1210 | 10 | 38275979 | 38278963 | Pvu10g1210 | 10 | 38275979 | 38278963 | ECH |