Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1210 ATGAGGCCGATTTTTGCTGGGAACTTGGAGTATGATACTCGTCAATCGGAGCTTGAACGGTTGTTTTCAAAGTATGGAAGGATTGACCGCGTGGATATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCAGAAGAAGCAATTCGAGCACTTGACAATGTTCCATTTGGTCATGAAAAGCGAAGGCTGTCTGTGGAGTGGGCTAGGGGTGAACGTGGACGTCATCGTGATGGATCAAAGGCAAACCAGAGGCCAACAAAAACCTTGTTTGTGATTAACTTTGATCCAATCCGAACTAGAGTTCGTGATATAGAAAAACATTTTGAACCTTATGGAAATGTTCTTCATGTCCGAATTCGAAGGAACTTTGCATTCGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTTTAGAGTGTACAAATATGAGTAAGATCCTGGACAGGGTGGTGTCTGTGGAGTATGCTTTGAGGGATGATGGTGAGAGGGGTGACAATTATGATAGTCCTAGACGAGGAGGTTATGATAGATCACCCAGTCCAGTTTATCACAGGCGTCCGAGCCCCGACTATGGTCGTCCACGCAGTCCTGTCTATGATAGGTATAATGGTGGACCAGACAGACGGGTGAGTCCTGATTATGGCAGGGCCATTCCTGATTATGGCAGGCGCAGGAGTCCTGATTATGGAAAGCCAAGGAGTCCTGATTATGGAAAGCCAAGGAGTCCTGATTATGTAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCTAGGAGTCCTAGTTATGGAAAGCCCAGGAGTCCTGGTTATGGAAAGCCCAGGAGCCCTGATAATGGGAAGCCCAGGAGTCCTGATTATGGGAAGACCAGGAGTCCTGATTATGCGAAGCCCAGGAGTCCTGAATATGGTAGATATCGCAGCCGTTCTCCATTGCGAAGGTCTAGAACGTAA 984 0.4675 MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGYDRSPSPVYHRRPSPDYGRPRSPVYDRYNGGPDRRVSPDYGRAIPDYGRRRSPDYGKPRSPDYGKPRSPDYVKPRSPGYGKPRSPGYGKPRSPSYGKPRSPGYGKPRSPDNGKPRSPDYGKTRSPDYAKPRSPEYGRYRSRSPLRRSRT* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1210 327 SMART rrm1_1 92 158 IPR000504 GO:0003723
Pvu10g1210 327 SMART rrm1_1 3 70 IPR000504 GO:0003723
Pvu10g1210 327 CDD RRM2_AtRSp31_like 92 161 - -
Pvu10g1210 327 MobiDBLite consensus disorder prediction 289 319 - -
Pvu10g1210 327 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 212 IPR029537 GO:0000398|GO:0005681
Pvu10g1210 327 Pfam Cornifin (SPRR) family 222 312 - -
Pvu10g1210 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Pvu10g1210 327 Gene3D - 84 173 IPR012677 -
Pvu10g1210 327 Gene3D - 1 83 IPR012677 -
Pvu10g1210 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Pvu10g1210 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Pvu10g1210 327 MobiDBLite consensus disorder prediction 222 247 - -
Pvu10g1210 327 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 212 - -
Pvu10g1210 327 MobiDBLite consensus disorder prediction 164 327 - -
Pvu10g1210 327 SUPERFAMILY RNA-binding domain, RBD 3 165 IPR035979 GO:0003676
Pvu10g1210 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1210 Pvu-Chr10 38275979 38278963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1210 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 23.626 3.90e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1210 K12893 - gmx:100797709 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1210 10 38275979 38278963 Pvu10g1210 10 38275979 38278963 ECH