Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1207 ATGAATTCTGGTGCTGTCTTGGTACTGCCTCCCGTGGGCAATGTGTTCGGGACTAGGGAGCCTCAGGATTTTGAGGATGAGTTTGCGGAGAAAGATCCAACCGGACGGTATATAAGGTACACTGAAATCTTGGGAAGAGGTGCCTTCAAAACTGTTTATAGGGGCTTTGATGAAGTTGATGGAATTGAAGTTGCTTGGAACCAAGTTAAGATTGATGGCCTCTTGCATTCAGTAGATGATCTTGCGAAACTTTATTCTGAAGTTAATCTTTTAAAGTCTTTGAAACATGACAATATCATTAAGTTCTGTGATTCTTGGATTGATGATAAGCAGAAAACTGTTAACATGATTACTGAACTCTTCACATCAGGAAATTTACGGCAATATCGCAAGAAGCATAAATATGTTGAAATGAAAGCTATAAAAGGTTGGGCCAGGCAGATTCTTCATGGCTTACTATATCTTCACAGTCACAGGCCACCCATTATTCATAGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCAGGGTGAAGTTAAGATAGGAGACCTTGGTTTGGCAATTGTCATGCAGCAACCAACTGCCCAAAGTGTTATTGGGACTCCTGAGTTTATGGCTCCAGAACTATATGAAGAGTCATACACAGAACTGGTTGACATCTATTCTTTTGGGATGTGCATATTGGAGATGGTTACTTTTGAGTATCCCTATTCCGAATGCAAAAATCCAGCTCAAATCTTTAAGAAAGTTACCTCAGGAATCAAACCCGCTTCCCTTAATAAGGTGAGTGATCCTCAAATTAAGGAGTTTATTGAGAAATGTTTGGTTCCAGCATCTGAGAGATTGTCAGCAGAGGAGCTTCTGAAAGACCCATTTCTACAAGTTGAGAATTCAAAGGATCCCGTCTTTTATCCTTTACAACCACCTAGAAGAACTCTGAGAGCATACTCATTCAAGTCTGGTTCTCAATCTATGGACTTGGATGGTGACTACAAACAGTTTTCTATGAATATCTATTCTGAAGGCAACCAGGAAAACCAATATTGTCCTGTTTTTGAAGTCCAGAGGGCAAATAATAACAATGAGTTTCGGTTGAAAGGGACTAAAAATGATGATAACTCGGTATCATTAACCTTGCGTATTGCTGATACATGTGCAGGTCGAGTAAGGAATATACATTTTCTCTTTTACCTTGATTCAGATACCGCAGTCTCTGTGGCCACAGAGATGGTTGAACATTTGGAGTTGGCAGATCATGATGTACCTTTCATAGCTGAGCTTATTGATTACTTGCTAATGAAACTTCTCTGTTGGTGGAATCCTTCACATGATCGTTGCATGCGTGGAGAAATAAGTCCTAATATAGATGTCCAAAGCTTCATGGGATGGCCATGGAGTTCCACCCTAGCGAGTGTTCCCTCCGATTTGGTTATTGAGGAGGATGGCTTATCTCATACAGCCACCGAAGAAGATTTTGTGGCCCCCGAGAAGAGCAGCTTTATAGAAAATGGTGATAAGGCTACTTTTGAGGGTGATTATAATTCACAAAGATCTGAACCTTCCGAGGTAGTTGCTGAAAATGCTTCCATTAAAGATGAAAATTATAATGATTCCAATGTTGATGCAAGCTCTAAATGCCTAAGTAGTGGCTACATCTCTGAACTTGAGCTGGGGGATGCATATTTTGAGGACTGTAAATTGCAACCAGAAGATTATTGTGGTGGGGAAGAAGTTGTGATAAATGAATACCCAAAGAACTCGGAGTCAGTTCTTGGAACATCTTCTAATGTTGGGAGCCCAAGAAGTTGTTGTTCTTATGTGTCTTCTTCACCAGTAGAGGAGATTGATCCTGAGCTACAGTTTGAACTTGCTGTAATTGAGTCACACTACCAGCATTGGATTGATGAACTCAACAAAATAAAGTTGGAGGCACTGGAATCCACCAGAAGGAGATGGATGGCCAAGAAGAAACTGGCTGTTCGGTGA 1992 0.4061 MNSGAVLVLPPVGNVFGTREPQDFEDEFAEKDPTGRYIRYTEILGRGAFKTVYRGFDEVDGIEVAWNQVKIDGLLHSVDDLAKLYSEVNLLKSLKHDNIIKFCDSWIDDKQKTVNMITELFTSGNLRQYRKKHKYVEMKAIKGWARQILHGLLYLHSHRPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAIVMQQPTAQSVIGTPEFMAPELYEESYTELVDIYSFGMCILEMVTFEYPYSECKNPAQIFKKVTSGIKPASLNKVSDPQIKEFIEKCLVPASERLSAEELLKDPFLQVENSKDPVFYPLQPPRRTLRAYSFKSGSQSMDLDGDYKQFSMNIYSEGNQENQYCPVFEVQRANNNNEFRLKGTKNDDNSVSLTLRIADTCAGRVRNIHFLFYLDSDTAVSVATEMVEHLELADHDVPFIAELIDYLLMKLLCWWNPSHDRCMRGEISPNIDVQSFMGWPWSSTLASVPSDLVIEEDGLSHTATEEDFVAPEKSSFIENGDKATFEGDYNSQRSEPSEVVAENASIKDENYNDSNVDASSKCLSSGYISELELGDAYFEDCKLQPEDYCGGEEVVINEYPKNSESVLGTSSNVGSPRSCCSYVSSSPVEEIDPELQFELAVIESHYQHWIDELNKIKLEALESTRRRWMAKKKLAVR* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1207 663 Pfam Protein kinase domain 41 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu10g1207 663 SMART serkin_6 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu10g1207 663 PANTHER KINASE DOMAIN PROTEIN 2 662 - -
Pvu10g1207 663 Gene3D Phosphorylase Kinase; domain 1 22 119 - -
Pvu10g1207 663 Gene3D Transferase(Phosphotransferase) domain 1 121 301 - -
Pvu10g1207 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Pvu10g1207 663 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 662 - -
Pvu10g1207 663 SUPERFAMILY Protein kinase-like (PK-like) 39 339 IPR011009 -
Pvu10g1207 663 ProSiteProfiles Protein kinase domain profile. 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu10g1207 663 CDD STKc_WNK 36 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1207 Pvu-Chr10 38250008 38254138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1207 25 445 MAP Kinase Kinase Kinase AT5G41990 59.674 6.50e-170 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Pvu10g1207 Pkinase 4.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1207 K08867 - gmx:100809602 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1207 10 38250008 38254138 Pvu10g1207 10 38250008 38254138 ECH