Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1204 ATGGGAAGGGCTCCTTGTTGTTCCAAAGTAGGGTTGCACAAAGGTCCATGGACTCCTAAAGAAGATGCATTGCTTACAAAATATATCCAAGCTCATGGAGAAGGCCAATGGAAATCACTACCCAAGAAAGCTGGGCTTCTTAGATGTGGAAAAAGTTGTAGATTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGAAACATAACCCCAGAAGAAGATGATCTTATAATCAGAATGCATTCACTTTTGGGGAATAGATGGTCCCTCATAGCAGGAAGGTTACCAGGAAGAACAGACAATGAAATAAAGAACTATTGGAACACCCATCTATGCAAAAAGATGAAAACTCCAACAGCAGAAGATGCTACCGACACAGCCAATATGATGTTGGAGAGTCCTGAACAAGAACCTGCGAGTGGCAACAAGAAGAAGAAGAACGGTGGGAAAAAGAAGAACAAGCAGAAGAAGAACAAAGAAGGCACAAACAGTGCTGAGCCACCAAAGACACAAGTTTATCTACCGAAACCGATTAGGGTGAAGGCTTTGTATTTACCAAGAACAGATAGTAACACATACACCTTTGATTCCAATTCATCAGCTAGTGCATCAACAAACCAAGAGAAGGAGGAAAGCCCTTTAACAAAGGAATCAAACTTGGCTAGTGAAATTGGAAATGTGGGAGAAAGTGATGATTTTGGGTTCTTCATTGAGGACCATGACTTGGTCAACGCCTCAGATATCGAATGCCACTCTTATTTTCCCTCAGATCATGGCTCGCTACAGCAACTGTATGAAGAATATTACCACCTCCTGAACATGGATCACACCCAATTCATCGAAATGAATTCATTTGGGGAATCTTTATTGGTGTGA 879 0.4141 MGRAPCCSKVGLHKGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLCKKMKTPTAEDATDTANMMLESPEQEPASGNKKKKNGGKKKNKQKKNKEGTNSAEPPKTQVYLPKPIRVKALYLPRTDSNTYTFDSNSSASASTNQEKEESPLTKESNLASEIGNVGESDDFGFFIEDHDLVNASDIECHSYFPSDHGSLQQLYEEYYHLLNMDHTQFIEMNSFGESLLV* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1204 292 MobiDBLite consensus disorder prediction 195 210 - -
Pvu10g1204 292 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu10g1204 292 MobiDBLite consensus disorder prediction 133 174 - -
Pvu10g1204 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu10g1204 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu10g1204 292 CDD SANT 16 61 IPR001005 -
Pvu10g1204 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu10g1204 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu10g1204 292 PANTHER MYB TRANSCRIPTION FACTOR 1 282 - -
Pvu10g1204 292 MobiDBLite consensus disorder prediction 195 221 - -
Pvu10g1204 292 SMART sant 13 63 IPR001005 -
Pvu10g1204 292 SMART sant 66 114 IPR001005 -
Pvu10g1204 292 CDD SANT 71 112 IPR001005 -
Pvu10g1204 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu10g1204 292 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pvu10g1204 292 Gene3D - 71 116 - -
Pvu10g1204 292 Gene3D - 14 66 - -
Pvu10g1204 292 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1204 Pvu-Chr10 38186999 38188192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1204 1 132 MYB Transcription Factor Family AT5G49330 68.182 3.52e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu10g1204 Myb_DNA-binding 9.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1204 K09422 - gmx:100803345 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1203 6 23032617 23034238 Pvu10g1204 10 38186999 38188192 PCT