Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1198 ATGGACCAACCGCCGCACCACCACAGCAGCAACGCCACCACCTCCGCCGATAAGCCCTCCACGCCGCGAGGCGGCACGCGTCACCCACTCTTCCGCGGAGTCCGCAAGCGCCGCTGGGGGAAATGGGTGTCCGAAATCCGGGAGCCGCGCAAGAAATCGCGCATATGGCTTGGCTCCTTTCCGGCGCCGGAGATGGCGGCGAAGGCCTACGATGTCGCCGCCTACTGCCTCAAGGGCCGCAAGGCGCAGCTCAATTTCCCCGACGAGGTCCACCGCCTCCCGCCGCTCCCTTCCGCCAGCACTCCCCGCGACATCCAGGCTGCCGCCGCCAAGGCCGCGCACATGATGATGGTCCAGGCCGCCGTCGCCACCGACTCTCCGGAGAAGAGCAGCATTACCTCCGGATGCGACCACGCAGCCGATGACTTCTGGCGCGAGATTGAGCTGCCGGAGCTCCTCCACAGAAAATGGTGGACCTCTTCCGGCGAATCCTCGCCGTGGACGGAGACTGACCTCCCGCCGCAGCAACCCTTCACCATGGCGTGCTTGTAG 552 0.6667 MDQPPHHHSSNATTSADKPSTPRGGTRHPLFRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPPLPSASTPRDIQAAAAKAAHMMMVQAAVATDSPEKSSITSGCDHAADDFWREIELPELLHRKWWTSSGESSPWTETDLPPQQPFTMACL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1198 183 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Pvu10g1198 183 MobiDBLite consensus disorder prediction 161 175 - -
Pvu10g1198 183 MobiDBLite consensus disorder prediction 161 183 - -
Pvu10g1198 183 MobiDBLite consensus disorder prediction 1 33 - -
Pvu10g1198 183 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Pvu10g1198 183 PRINTS Ethylene responsive element binding protein signature 69 89 IPR001471 GO:0003700|GO:0006355
Pvu10g1198 183 SUPERFAMILY DNA-binding domain 30 89 IPR016177 GO:0003677
Pvu10g1198 183 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Pvu10g1198 183 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 183 - -
Pvu10g1198 183 MobiDBLite consensus disorder prediction 1 21 - -
Pvu10g1198 183 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
Pvu10g1198 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 183 - -
Pvu10g1198 183 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Pvu10g1198 183 CDD AP2 29 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1198 Pvu-Chr10 38090570 38091511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1198 1 183 AP2-EREBP Transcription Factor Family AT1G01250 52.551 4.77e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu10g1198 AP2 7.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1198 K09286 - gmx:100802845 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1198 10 38090570 38091511 Pvu10g1198 10 38090570 38091511 ECH
Pvu6g1196 6 22942518 22943272 Pvu10g1198 10 38090570 38091511 PCT