Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1197 ATGAAGATTGAGGTGGGGTTGGGAGGGGTGTGGAATGAGGAAGAGAAAGCGACGGTGGTGGAGGTTTTGGGTCGCGGTGCGTTTGATTACTTGGTGGCGAATTCGGTTTCTAATGAGAATCTGTTAATGGCGTTTGGGAGCGGCGAGAATCTGCAGAACAAGCTTTCGGATCTCGTGGAGCGTCCTAACGCGTCGAACTTCAGTTGGAACTACGCGATCTTCTGGCAAATTTCGCAGTCCAAGTTTGGGGATTGGGTTTTGGGGTGGGGAGATGGGTGTTGTAGGGAACCTAGGGAGGGAGAAGAGGGTGGAGAAGTGAGAGGGAAAGGTAGAGGGGTTGTTGCTGATGACGAGAAGGTGCAGGGGATGAGGAAGAGGGTGTTGCAGAAGCTGCACATGACTTTTGGGGGTTCTGACGAGGACAATTATGCTTTTGGGTTGGACCGTGTTACTGACACCGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTTCCCCGTGGACTAGGGGGTCCAGGTAAGTGCTTTGCTTCTGGGAAGCATTTGTGGCTCTCGGATGTGTTCAAATCTAGTTTTGATTACTGTGTGAGGTCTTTCTTGGCCAAATCTGCTGGAATTCAGACTGTTGTTTTAGTGCCTACTGATATGGGAGTGGTGGAGATGGGGTCTGTGAGGATGGTGGGTGAGAGTTTTGAGCTTTTGCAGGCTTTGAAGTCTGTGTTTTCTTCACAGGCATCATTGGTCCCTCCCAGGGTCAAGCCAATTGCACCATTGGATTTGGTGAGTGAGAAGAGAGAAGAGAATGCAGATGCCCCTTTTTCTAGTGTGCCAATTGGGGATAAGGATAACAATAACAGCAGTAATGGTAATAATAGAGTTGAAGGAATTGGAGTTCCAAAGATTTTTGGGCAGGATTTGAACAGTGTGACTCAATTCAGGGAGAAACTTGCTGTGAGGAAAATGGAGGAGAGGCCCAGGGCGTGGGGAGGTCATCCCAATGGGAATACTATTGGTTTTCCGAATGGTATCCATACTTCTAATTGGGGGACCGGTCAAGTTGTGAGGCAGGTTGCTCCTCCTGAAATGCATGCTCGTAGGTTGGCCAGCTCCGGTACATTGTCTGTGCCTGTGCCTGAGCTGGCCAATGGCACAAGGCATGATTTTGTGCATAACAATTATCAGCAGCAACGGCCGGTTCAGATGCAAATTGATTTCTCAGGAGCCACTTCAAGGGGAGCCACTTCAAGGGCTTCAGGGAGATCAATCATTGCTGAATCTGAGATTTCTGATGTTGAGGCCTCGTGCAAGGAGGAGAGAGTGAGTGTTGCTGATGACAGGAGGCCGAGGAAGCGGGGAAGGAAGCCAGCTAATGGAAGGGAGGAACCCCTCAATCATGTGGAGGCAGAGAGGCAAAGGCGGGAGAAGCTGAACCAGCGGTTCTATGCGCTGCGTGCTGTTGTTCCAAATATCTCCAAGATGGACAAGGCATCACTATTGGGTGATGCTATTGCTTACATCAATGAACTTCAAGCGAAACTCAAGACCATGGAGTCTGAGAGAGAGAGATTTGGAAGCACCTCTATGGATGGATCAGCAGTGGAAGCCAATGCAAGAGCAGAAAATCATAGTAATGGAGCTCCTGATGTGGATGTTCAAGCTGCACAAGATGGGGTGGTAGTAAAGGTGAGCTGCCCTATTGATGTTCATCCAGTTTCAAAAGTCATCCAAACTTTCAAAGAGGCAGAGATTGGTGTTGTTGATTCAAAACTTACTGCTGCAAATGATACTGTTTTCCATACATTTGTAGTTAAATCTCAGGGACCTGATCAGCTGACCAAGGAAAAGTTGATTGCATTGTTTTCCAAAGCATCCAACCCCATACAGACATCGTGA 1893 0.4823 MKIEVGLGGVWNEEEKATVVEVLGRGAFDYLVANSVSNENLLMAFGSGENLQNKLSDLVERPNASNFSWNYAIFWQISQSKFGDWVLGWGDGCCREPREGEEGGEVRGKGRGVVADDEKVQGMRKRVLQKLHMTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGLGGPGKCFASGKHLWLSDVFKSSFDYCVRSFLAKSAGIQTVVLVPTDMGVVEMGSVRMVGESFELLQALKSVFSSQASLVPPRVKPIAPLDLVSEKREENADAPFSSVPIGDKDNNNSSNGNNRVEGIGVPKIFGQDLNSVTQFREKLAVRKMEERPRAWGGHPNGNTIGFPNGIHTSNWGTGQVVRQVAPPEMHARRLASSGTLSVPVPELANGTRHDFVHNNYQQQRPVQMQIDFSGATSRGATSRASGRSIIAESEISDVEASCKEERVSVADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESERERFGSTSMDGSAVEANARAENHSNGAPDVDVQAAQDGVVVKVSCPIDVHPVSKVIQTFKEAEIGVVDSKLTAANDTVFHTFVVKSQGPDQLTKEKLIALFSKASNPIQTS* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1197 630 MobiDBLite consensus disorder prediction 278 292 - -
Pvu10g1197 630 Coils Coil 499 526 - -
Pvu10g1197 630 MobiDBLite consensus disorder prediction 438 471 - -
Pvu10g1197 630 Gene3D - 453 525 IPR036638 GO:0046983
Pvu10g1197 630 CDD bHLH_AtAIB_like 457 522 - -
Pvu10g1197 630 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 460 509 IPR011598 GO:0046983
Pvu10g1197 630 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 463 523 IPR036638 GO:0046983
Pvu10g1197 630 SMART finulus 466 515 IPR011598 GO:0046983
Pvu10g1197 630 PANTHER MYC 1 625 IPR045084 GO:0003700|GO:0006355
Pvu10g1197 630 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 625 - -
Pvu10g1197 630 Pfam Helix-loop-helix DNA-binding domain 464 510 IPR011598 GO:0046983
Pvu10g1197 630 MobiDBLite consensus disorder prediction 267 292 - -
Pvu10g1197 630 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 241 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1197 Pvu-Chr10 38037818 38039710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1197 10 629 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 51.597 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu10g1197 bHLH-MYC_N 1.8e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1197 - - gmx:100807078 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1197 10 38037818 38039710 Pvu10g1197 10 38037818 38039710 ECH
Pvu6g1195 6 22928618 22930465 Pvu10g1197 10 38037818 38039710 PCT