Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1186 ATGGGCATCTTAGAAGTCCTTTTTCCCTTCTTCATCTTTCCTGTCATATATGCCTCTAGTGATTGCCGATTTTCTTTTTGTGGCAGCAATGGTATCATTATTCGTTTCCCCTTTCAACAAGAAGGTAAGCAAAATCCTTATTGTGGCTATCCTGGTTTCAACTTAATTTGCACGAATAATAGCAAAACAGTGCTAAAACTTCCTTATTCTGGGCTATTCTACGTGCGCAACATTAACTACCTCACACAAAAGATACAAGTCTACGACCCAGATGATTGCCTCCCCAAACGTCTTCTCAGCCTCAATGTCTCAGCCTCTCCTTTTAGTCCCACTTTTACTCGTAACTACACCTTCTTAAGCTGCCCATTAAAGAACGCAGGATCACAATTCATTCCCATTGACTGCCTCAGTAATTCCACACATTTTGTATCAGCTGTCCTCTCACTTAGTTTGCCCAATCCATTACCTGCATCTTGCCATGTTATTACCAGTCTTTTTGTCCCAGTTGCAGGACCAGAGCAGCGCTTTGAGGGTAATTTCAAAGGTGAGTTTAGTGAAGATCTTGCATTAACATGGGATAGACCTGACTGTAGATATTGTGAAGCACAAGAACAATTGTGTGGGTTTGATCGAAACAACAACAATCAACTCTTCTGTTTCTCTTACCAAACAGGTGCATCAAAACAAGGAATCCAAATCTTCAGAATCATTACATTAAGCGTTGTTGGACCAGCAGCAATCTTTGCAATTGTGATGGCATGTTGCGTGTGCTACAAGGACAGACTAACCAACATTCGTAACAATGCTATTGCAAGATCTGCACCAGCCACAATATTACCAGCACCAGAGATTGTTACCACTGGTTTGGACGAGTCCACCATTGAGTCCTATGAGAAGGTAGTGCTTGGAGAGAGTAGAAGAGTCCCTGGACCCAACAATGGTTGCTGTTGGATATGCTTATCAGAGTACAATAGCAAAGAGACAATACGATGTATTCCTGAATGCGAACACTGCTTCCATGCAGATTGCATAGACGAGTGGCTGCGCATCAATACCACGTGCCCAGTTTGTCGTAACTCTCCCTCTCCTTCTCCTTCTCCTCGTGTTACCTCCATTAACCCCTAA 1125 0.4284 MGILEVLFPFFIFPVIYASSDCRFSFCGSNGIIIRFPFQQEGKQNPYCGYPGFNLICTNNSKTVLKLPYSGLFYVRNINYLTQKIQVYDPDDCLPKRLLSLNVSASPFSPTFTRNYTFLSCPLKNAGSQFIPIDCLSNSTHFVSAVLSLSLPNPLPASCHVITSLFVPVAGPEQRFEGNFKGEFSEDLALTWDRPDCRYCEAQEQLCGFDRNNNNQLFCFSYQTGASKQGIQIFRIITLSVVGPAAIFAIVMACCVCYKDRLTNIRNNAIARSAPATILPAPEIVTTGLDESTIESYEKVVLGESRRVPGPNNGCCWICLSEYNSKETIRCIPECEHCFHADCIDEWLRINTTCPVCRNSPSPSPSPRVTSINP* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1186 374 Pfam Wall-associated receptor kinase C-terminal 156 221 IPR032872 -
Pvu10g1186 374 SUPERFAMILY RING/U-box 315 362 - -
Pvu10g1186 374 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 366 - -
Pvu10g1186 374 ProSiteProfiles Zinc finger RING-type profile. 316 358 IPR001841 -
Pvu10g1186 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 363 IPR013083 -
Pvu10g1186 374 Pfam Ring finger domain 316 358 IPR001841 -
Pvu10g1186 374 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 5 366 - -
Pvu10g1186 374 Pfam Wall-associated receptor kinase galacturonan-binding 22 89 IPR025287 GO:0030247
Pvu10g1186 374 SMART ring_2 316 357 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1186 Pvu-Chr10 37897412 37899491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1186 24 363 C3H Transcription Factor Family AT2G25410 45.533 6.55e-96 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1186 - - gmx:100798415 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1186 10 37897412 37899491 Pvu10g1186 10 37897412 37899491 ECH
Pvu6g1181 6 22822027 22824307 Pvu10g1186 10 37897412 37899491 PCT