Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1180 ATGACTGCAAAGGGACAGAGATTTGTTAGGTTTAAGGATTGGAAGTCATTTTCATCTTCAAGTATCGAGCTCAATGATTCCACTAGTGACGGATTTCACAAAAGAAAAGTTCAATCAACACAAAGTTCTGTCAGTGAAGAATCAATAAGAAATTTGTCTTGTAGGAGGCATGTTCTTCATCCACAGGGACCAACACTTCAAAAGTGGAACAAAATTTTTGTAATCACAAGTGTGATGGCAATCTCTGTGGATCCACTTTTCTTTTACATCCCAGTGATTGATGACGATAAAAAATGCCTTGATTTGGATGGAACACTCAAGATTACTGCCAGTGTTCTCCGCACATTCTTTGATCTTTTCTACATTCTTCACATTATCTTTCAGTTTCGAACCGGGTTTATTGCACCTTCCTCCCGTGTGTTTGGAAGGGGTGAGCTTGTTGCTGACACTTCAGCCATAGTCAGGAAATACCTAAGTTCTTACTTCAGCATTGACATTCTATCAATTATTCCACTTCCTCAGATGGTGATTTTAGCTATGATCCTATTCCCAACATGCTCAGCTCCTTACGTGGGAAAGGATTTGTTGAAGTATGCAGTAATTGCCCAGTACGTGCCAAGACTTCTGCGGATCTACCCTTTATTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCAGCTTACAATCTTTTTCTCTACATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTATCTGTTTTCAGTAGAATCAAGGGTGAGGTGCTGGCGCAAGCAGCTGAAGAATACTACTTTCTTTCATGAATCCTACCTTAGCTGTGGATCTTACAATTCTACTGTTCAATCACTTCTTAATCACTCTTGCCCTATCAATGATCTACAAAACATTGGAGACCTGGAACCTTTCAATTTTGGAATGTTCATAGAAGCTATAAAGTCTCGAGTGTTAGAATCAACTACTGATTTTCATCACAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAGTCTAAGTTCAGTTGGGCAAGGTCTCGAGACAAGTACTTATGTAGGGGAGATAATCTTTGCTATCTCCATTGCTGTCTCTGGATTGGTTCTATTTGCATCACTTATTGGAAACATGCAGAAATATCTACAATCTACCACTGTCAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACTGTGGATGTCCCACCGTATGCTACCTGATTTCCTGAAGGAAAGAATTAGACGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGACATTAATTCGCAACCTCCCCAAAGATTTAAGAAGGGACATAAAGCGCCATCTTTGCTTAGATCTACTTAAAAAAGTGCCATTGTTTGAGAGCATGGATAATCAATTGTTGGATGCACTGTGTGATAAACTGAAGCCAGTCCTGTACACAGAGAAAAGTCACATAGTTCGTGAAGGGGATCCAGTTGATGAAATGCTGTTCATCATGCGTGGAACACTTGCAACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCTGAGATCAAGGCTGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCCTTGGACCCCAACTACTCCTCAAATCTTCCCATTTCAACTAGAACTGTGGAAACTATATCAGAAGTTGAAGCCTTTGCTCTCATGCCTGAGGACTTGAAATGTGTTGCTTCCCAATTTCGACGTCTTATAAACAACAAACAACTCCAACACACTTTCAGGTTCTATTCCTTGCAATGGAAGACATGGGGTGCATGTTTCATACAAGCAGCATGGCGTAGATACAGAAAAAAGAAGGCAGAGAGGCTGTTACGTGAAGCAGAAGAAAGGATTCAAAATTTGGAGAATGAGGAAGGGTCCGCACCAAGCTTTGCAGCCATTTTACATGCATCAAGGTTTGCATCAACTGCATTGCGCCACCTGCGAAGTGGTAAACGTACCAGAGTGCCACAGCCACAGAAATTGCTACCCCTGATGCCTCCGAAGCCTTCTGAGCCAGATTTCACTGCTCTGAAAAACTAG 2082 0.4198 MTAKGQRFVRFKDWKSFSSSSIELNDSTSDGFHKRKVQSTQSSVSEESIRNLSCRRHVLHPQGPTLQKWNKIFVITSVMAISVDPLFFYIPVIDDDKKCLDLDGTLKITASVLRTFFDLFYILHIIFQFRTGFIAPSSRVFGRGELVADTSAIVRKYLSSYFSIDILSIIPLPQMVILAMILFPTCSAPYVGKDLLKYAVIAQYVPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESRVRCWRKQLKNTTFFHESYLSCGSYNSTVQSLLNHSCPINDLQNIGDLEPFNFGMFIEAIKSRVLESTTDFHHKFFYCFWWGLRSLSSVGQGLETSTYVGEIIFAISIAVSGLVLFASLIGNMQKYLQSTTVRVEEMRIKRRDAELWMSHRMLPDFLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLKKVPLFESMDNQLLDALCDKLKPVLYTEKSHIVREGDPVDEMLFIMRGTLATATTNGGRTGFFNSSEIKAGDFCGEELLTWALDPNYSSNLPISTRTVETISEVEAFALMPEDLKCVASQFRRLINNKQLQHTFRFYSLQWKTWGACFIQAAWRRYRKKKAERLLREAEERIQNLENEEGSAPSFAAILHASRFASTALRHLRSGKRTRVPQPQKLLPLMPPKPSEPDFTALKN* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1180 693 SUPERFAMILY cAMP-binding domain-like 393 580 IPR018490 -
Pvu10g1180 693 Coils Coil 617 640 - -
Pvu10g1180 693 ProSiteProfiles cAMP/cGMP binding motif profile. 464 548 IPR000595 -
Pvu10g1180 693 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 691 - -
Pvu10g1180 693 Gene3D - 72 388 - -
Pvu10g1180 693 MobiDBLite consensus disorder prediction 661 693 - -
Pvu10g1180 693 CDD CAP_ED 464 596 IPR000595 -
Pvu10g1180 693 SMART cnmp_10 464 595 IPR000595 -
Pvu10g1180 693 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 691 - -
Pvu10g1180 693 PRINTS EAG/ELK/ERG potassium channel family signature 125 134 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pvu10g1180 693 PRINTS EAG/ELK/ERG potassium channel family signature 242 252 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pvu10g1180 693 PRINTS EAG/ELK/ERG potassium channel family signature 333 350 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pvu10g1180 693 PRINTS EAG/ELK/ERG potassium channel family signature 359 370 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pvu10g1180 693 PRINTS EAG/ELK/ERG potassium channel family signature 377 386 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pvu10g1180 693 PRINTS EAG/ELK/ERG potassium channel family signature 427 434 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pvu10g1180 693 Gene3D Jelly Rolls 462 582 IPR014710 -
Pvu10g1180 693 SUPERFAMILY Voltage-gated potassium channels 60 386 - -
Pvu10g1180 693 Pfam Ion transport protein 69 392 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pvu10g1180 693 Gene3D Helix hairpin bin 391 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1180 Pvu-Chr10 37791631 37797374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1180 9 693 Ion Channels AT4G01010 59.775 0.0 849
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1180 K05391 - gmx:100795201 1174.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1177 6 22804166 22808740 Pvu10g1180 10 37791631 37797374 PCT