Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1178 ATGAAACCAATCTCACTTGCAAAGATTGATGAGAATGGAGGATTATTTTCTTATGCTTCCTGGCTAGGAAAGCACCCTTCTGTGTTGGACAACTTTGAGGAAGTGATGAAGGTTGCTGAAGGGAAAGAGATTGTTGTGTTTTTGGACTATGATGGAACACTCTCACCGATTGTAGATGACCCTGATAAGGCTTACATGAGTGATGCTATGCGCGCAGCTGTGCGTGAAGTTGCTTATTGTTTTCCCACTGCCATTGTTAGTGGAAGGCGTAAGGATAAGGTGTATGAATTTGTGAAGTTGAGGAATGTTTACTATGCTGGAAGTCATGGTATGGATATATCAACTCCATTAGGGTCTTCAAAATATGAAGATCAGAAGCATCAGATAAAGTGTGTTGATGAAAAGGGTAATCATGTTGTTCACTTTCATCCTGCAAAAGAATTTTTGCCAACAATTCAAGAGATAATCAAGGTTTTGAAAGAAAATACAAGAAGAATAAAGGGCTCTATGATTGAGGACAACATGTTCTGTGTCACTGTACACTATCGGTGTGTGAAAAATGAAGAGGATGTTAGTGTTCTGAGAGAAATGGTGGAGTCCATAATGAAACCTCACCCCAATTTCCACATATCAAGTGGAAGAAAGGTTATGGAGATACGTCCAAAAGTAAACTGGGACAAAGGACGTGCTCTTATGTATTTGCTTGACACTCTTGGCTTTGACAACTTCAACAATGTTTTTCCATTGTACCTTGGGGATGATAGAACTGATGAAGATGCTTTTAAGGTTATAAGAGACATTGGACATGGTTTTCCCATTGTTGTTTCTTCCATTGCAAAGGAGACTGAAGCTTCATTTTCCCTGCGTGACCCTTCTGATGTGCTGGCTTTCTTGCTTCGTTTAACAAAATGGAAGAAGAACCTGTTACACAAAACTAAATAA 942 0.3928 MKPISLAKIDENGGLFSYASWLGKHPSVLDNFEEVMKVAEGKEIVVFLDYDGTLSPIVDDPDKAYMSDAMRAAVREVAYCFPTAIVSGRRKDKVYEFVKLRNVYYAGSHGMDISTPLGSSKYEDQKHQIKCVDEKGNHVVHFHPAKEFLPTIQEIIKVLKENTRRIKGSMIEDNMFCVTVHYRCVKNEEDVSVLREMVESIMKPHPNFHISSGRKVMEIRPKVNWDKGRALMYLLDTLGFDNFNNVFPLYLGDDRTDEDAFKVIRDIGHGFPIVVSSIAKETEASFSLRDPSDVLAFLLRLTKWKKNLLHKTK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1178 313 Gene3D - 140 313 IPR023214 -
Pvu10g1178 313 Gene3D - 44 130 IPR023214 -
Pvu10g1178 313 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 313 IPR044651 GO:0004805|GO:0005992
Pvu10g1178 313 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 313 - -
Pvu10g1178 313 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 46 268 IPR006379 -
Pvu10g1178 313 TIGRFAM T6PP: trehalose-phosphatase 42 303 IPR003337 GO:0003824|GO:0005992
Pvu10g1178 313 Pfam Trehalose-phosphatase 47 292 IPR003337 GO:0003824|GO:0005992
Pvu10g1178 313 CDD HAD_TPP 45 296 - -
Pvu10g1178 313 SUPERFAMILY HAD-like 45 306 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1178 Pvu-Chr10 37713954 37719641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1178 41 303 Trehalose Biosynthesis Gene Families AT1G06410 23.297 4.14e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1178 K01087 - gmx:100799466 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1178 10 37713954 37719641 Pvu10g1178 10 37713954 37719641 ECH