Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1177 ATGCACACAAAGCTGTTGACCCAAATTCGTCTTCTTCATCCCCTTCTTCCCATGAAGCCTCGCACACTTCCTCTTCTCTCTCGCGCCATCTTCTTCCCTCCCTCCAAGTTCCTCCGAACCGCAGCAACCTTTAAAGCTCGCGCCTTTTCCGCCCGGGTCAGTGCCCACGCCCGCGACAAGATTCCGGTTCGCCCCTCCAAGAGCCTCGTCGACGACGAGGCTGAACTCAGTGACTGGGTCGATGAGTTGCGGACCGGCCGGGTCGACCGCTTCCAACGGCTCGGCAGCGACGACGATGAAGGCCGCGAAACCCGGCCGCCGCGGAGGAATAACAATAGGGCTTCCCCCAATTTGGGGAAGAGGAGGGGCGAGGATTTGATGAGGGGAAGGCAGAATGCGGGTGCGAGGAGAAAGTTTCAACCTCGGAGTGACGACGATGAGGAAATGGTGGAGAGTGGAAGGAAGTTCAAGGGTGGTGGCGTTGGAACGTTTCTCAGCGAAGATGATAGTGAAGATGAAAACAGTGATGGGAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAACCGCTTTGTTTGGAAAACAAAACGGTCTGAAGCCGAAGACTGTTGAACCGACTCCTAGACCATCTTCTCCTGGAGGTTCTGATTCTTATCTGAGTGAATCAAGATTTGACCAATGTTCAGTCTCCCCACTGTCACTAAAAGGAATCAAGGATGCTGGATATGAGAAAATGACGGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCCAGGACAGGCACTGGAAAAACAGTAGCATTTTTGCTTCCGTCAATTGAAGTTGTGGTAAAGTCACCTCCAAGTGATCGTGATAATAGGCGGCCACCAATTTTTGTTCTTGTCATATGCCCAACTCGAGAACTTGCAAGTCAGGCTGCTGCAGAGGCCAATAAACTGCTTAAGTATCATCCTGCCATTGGTGTTCAAGTTGTGATTGGAGGCACAAGACTTGCTCTAGAACAGAAGCGAATGCAAGCAAATCCTTGCCAGATCCTTGTGGCTACTCCTGGAAGGCTTAGAGACCATATTGAGAATACTGCTGGTTTTGCATCTAGGCTGATGGGTGTGAAGGTTTTGGTGCTTGATGAAGCTGATCATTTACTTGACATGGGATTTCGCAAAGACATTGAAAAGATAATTGCAGCAGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACAGTTCCAGAAGAGGTACGTCAAGTTTGTCATATTGCTTTGAGAAGGGATCACGAATTTATCAATACAGTTCAAGAGGGTAGTGAAGAGACACATTCTCAGGTCCGCCAGACGCATTTAGTTGCTCCATTGGACAAGCATTTCCCTTTACTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTTCTGAACTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTATACAGGTTGGTTTGCCAACAGATAGAGAACAGTATATACATCGCCTGGGTAGAACTGGCCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTGCTGGCTCCTTGGGAAGAGTTCTTTTTGTCTACCATAAAAGATTTGCCTATTGAGCAAGTTCCCGTGGTACCTTCAGTTGATCCTGATACTAAGAGAAAGGTAGAAAAAGCTCTATCCCATGTGGATATGAAGAACAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCGAACAAGAAAGTGGGGCGTGACAAGCATAGGCTAGTGGAGCTTGCAAACGAGTTCAGTCGAAGCATGGGGCTTGATAACCCTCCAGCTGTAGCTAAGATAGTCCTTGGCAAGATGGGCCTCAGGAATATCCCTGGTTTACGTTCCAAATAG 2076 0.4754 MHTKLLTQIRLLHPLLPMKPRTLPLLSRAIFFPPSKFLRTAATFKARAFSARVSAHARDKIPVRPSKSLVDDEAELSDWVDELRTGRVDRFQRLGSDDDEGRETRPPRRNNNRASPNLGKRRGEDLMRGRQNAGARRKFQPRSDDDEEMVESGRKFKGGGVGTFLSEDDSEDENSDGSEEEEILNKSRTALFGKQNGLKPKTVEPTPRPSSPGGSDSYLSESRFDQCSVSPLSLKGIKDAGYEKMTVVQEATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVVKSPPSDRDNRRPPIFVLVICPTRELASQAAAEANKLLKYHPAIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFASRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQEGSEETHSQVRQTHLVAPLDKHFPLLYVLLKDHIADDVDYKVLVFCTTAMVTRLVSELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPTDREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTIKDLPIEQVPVVPSVDPDTKRKVEKALSHVDMKNKEAAYQAWLGYYNSNKKVGRDKHRLVELANEFSRSMGLDNPPAVAKIVLGKMGLRNIPGLRSK* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1177 691 MobiDBLite consensus disorder prediction 91 222 - -
Pvu10g1177 691 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 222 250 IPR014014 GO:0003724
Pvu10g1177 691 MobiDBLite consensus disorder prediction 91 109 - -
Pvu10g1177 691 CDD DEADc_MSS116 229 438 - -
Pvu10g1177 691 Pfam Helicase conserved C-terminal domain 475 575 IPR001650 -
Pvu10g1177 691 CDD SF2_C_DEAD 451 584 - -
Pvu10g1177 691 PANTHER RNA HELICASE 199 689 - -
Pvu10g1177 691 PANTHER RNA HELICASE 33 145 - -
Pvu10g1177 691 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 436 IPR014001 -
Pvu10g1177 691 SMART ultradead3 241 454 IPR014001 -
Pvu10g1177 691 Gene3D - 445 673 IPR027417 -
Pvu10g1177 691 MobiDBLite consensus disorder prediction 208 222 - -
Pvu10g1177 691 MobiDBLite consensus disorder prediction 118 154 - -
Pvu10g1177 691 Pfam DEAD/DEAH box helicase 247 424 IPR011545 GO:0003676|GO:0005524
Pvu10g1177 691 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 470 618 IPR001650 -
Pvu10g1177 691 Gene3D - 202 438 IPR027417 -
Pvu10g1177 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 592 IPR027417 -
Pvu10g1177 691 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 199 689 - -
Pvu10g1177 691 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 33 145 - -
Pvu10g1177 691 SMART helicmild6 494 575 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1177 Pvu-Chr10 37705844 37711730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1177 222 600 Eukaryotic Initiation Factors Gene Family AT3G19760 29.156 7.63e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1177 - - gmx:100795739 1121.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1177 10 37705844 37711730 Pvu10g1177 10 37705844 37711730 ECH