Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1154 ATGAGCTCTCAGTCACAACCTCAGCAACAAGGCAACCACAAGAACCTAGAAGAAGAGAAGGAAGAAGAAGAAAACCATTTGCTACAAGCAGAATGCGAGTCAATACCGTTGTCCTCACCCCATGTAACACCCTCAAACTGGGAACATGCTTACAAAGAAGAAGAAGAAGAAGAGAAAGACACGGTGTATGCAGCCAAGGACAAGGTGCAGATATTTGACTTGGAGTCTTCCGGAGGCGGAGGGTCCACGGCGGTGCCGCCGTTTTCGTGGAGGAAGCTGTGGCTGTTCACGGGGCCAGGGTTGTTGATGAGCGTGGCGTTTTTGGACCCGGGGAACCTTGAAGGGGACCTTCAAGCTGGTGCAATTGCAGGGTACTCCCTGCTTTGGTTGTTGATGTGGTCCACCATCATGGGGTTGGTGATACAGCTTCTGTCGGCGAGGCTCGGGGTGGCGACCGGGCGGCACCTGGCGGAGCTGTGCAGGGAGGAGTACTCCAATTGGGCCAGGTTGGTGCTGTGGATCTTGGCTGAACTGGCTCTCATTGCTGCTGATATTCAAGAGGTTATTGGCAGTGCCATTGCTTTCAAGATTCTTAGCCATGGGCTTATCCCCATTTGGGCTGGTGTGGTTATCACAGCCACGGATTGTTTCTTCTTTCTATTTCTGGAGAACTATGGAGTGAGGAAGTTGGAAGGTGTTTTCGCAGTTTTCATTGGAACTATGGGCCTTTCTTTTGCGTGGATGTTCTTGGATACAAAACCCAGTGAAGAAGAACTATTGATGGGTCTTTTAATCCCAAGACTTAGTTCAAAAACTCTTCGTCAGGCTGTGGAAATTGTGGGGTGTGTGATAACCCCACATAATGTGTTCCTCCATTCTGCATTGGTACAATCAAGGGACATTGATATCCGTAACAAAGGCCAGGTTCAAGAGGCTCTCAACTACTACTCAATTGAGTCCTCAGTTGCACTTTTAGTGACATTGGTGATCAATCTATGTGTGATAACAGTTTTTGCTAGGGTGTTCTATGGTACAGAACAGGCCAATGGCATAGGATTGGTAAATGCAGGGCAATATCTGGAGGAGAGGTATGGGGGAGGGTTGTTTCCAATTCTCTATATATGGGGTATTGGTTTACTAGCAGCTGGCCAAAGTAGTACCATAACTGGCACATATGCTGGCCAGTTTATAACAGAGGGTTTTCTTAAGCTCAATATAAAGAAGTGGTTGAGGGCATTGATCACTAGAAGTTGTGCAATTGTTCCAACTATGATTTGTGCAATTGCTTTTAATACATCAGAAAGTTCATTGGATACCTTGAATGAATGGCTTAATGTGGTCCAAGCAATACAGATTCCTTTTGCACTTATCCCCCTTCTTACTTTGGTGTCCAAAGAGGAGGTCATGGGGTCCTTCAGAATAGGGCCTATGGTAGAGAAAGTGGCTTGGAGTGTGGCTGTGCTGGTAATATTGGTTTATGGATATATGTTATTAGATTTCTTCATGGATGAAGTGGATGGAGTATTGTTTGGTTTTCTAGTCTTCCTTGGTGCTTTGGCTTGGATTTCATTTATTATATATTTGGTTCAACATAGTGGTGCCATTCCTTCAATCATGGTGAGGTCCCCAAATTCAAGAGGTTTTTTCTCTCTTTCTGGGAACTAA 1665 0.4565 MSSQSQPQQQGNHKNLEEEKEEEENHLLQAECESIPLSSPHVTPSNWEHAYKEEEEEEKDTVYAAKDKVQIFDLESSGGGGSTAVPPFSWRKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTIMGLVIQLLSARLGVATGRHLAELCREEYSNWARLVLWILAELALIAADIQEVIGSAIAFKILSHGLIPIWAGVVITATDCFFFLFLENYGVRKLEGVFAVFIGTMGLSFAWMFLDTKPSEEELLMGLLIPRLSSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEALNYYSIESSVALLVTLVINLCVITVFARVFYGTEQANGIGLVNAGQYLEERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMICAIAFNTSESSLDTLNEWLNVVQAIQIPFALIPLLTLVSKEEVMGSFRIGPMVEKVAWSVAVLVILVYGYMLLDFFMDEVDGVLFGFLVFLGALAWISFIIYLVQHSGAIPSIMVRSPNSRGFFSLSGN* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1154 554 MobiDBLite consensus disorder prediction 1 56 - -
Pvu10g1154 554 PRINTS Natural resistance-associated macrophage protein signature 172 198 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pvu10g1154 554 PRINTS Natural resistance-associated macrophage protein signature 202 221 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pvu10g1154 554 PRINTS Natural resistance-associated macrophage protein signature 227 248 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pvu10g1154 554 PRINTS Natural resistance-associated macrophage protein signature 276 299 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pvu10g1154 554 PRINTS Natural resistance-associated macrophage protein signature 383 402 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pvu10g1154 554 PRINTS Natural resistance-associated macrophage protein signature 411 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pvu10g1154 554 PRINTS Natural resistance-associated macrophage protein signature 445 464 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pvu10g1154 554 Hamap Divalent metal cation transporter MntH [mntH]. 78 501 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pvu10g1154 554 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 30 554 - -
Pvu10g1154 554 Pfam Natural resistance-associated macrophage protein 114 475 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pvu10g1154 554 Coils Coil 6 33 - -
Pvu10g1154 554 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 30 554 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pvu10g1154 554 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 91 469 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pvu10g1154 554 MobiDBLite consensus disorder prediction 13 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1154 Pvu-Chr10 37315781 37319477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1154 56 532 Inorganic Solute Cotransporters AT1G47240 73.278 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1154 K21398 - gmx:100801411 951.044