Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1096 ATGTCCTCCTTCAACTCCTTCTCCCCTCCACCCCCCACCCCTTACTTCACCAACCTCGGCTTCGGCTACTCCATCGCCATCGCCCTCGGAGTCCTCTTCCTCATCTCCACCCTCATCCTCTCCTCCTACCTCTGCTGCCGCACCCTCCGCCACCGCAACAACAACCACCACCGCCGCCGCCACCGCCACAACCTCCACGCCCCTGATGGCATCGTTCTCCCGCGCGTTATCTTCGTCGCCGAGGACGACGACGACGGCGCCCGACAGAACGACGCTGTCTCCGGCCTCGAACAGGCCGTCATAAACTCCTACCCCAAGTTCCCCTTCACCAAAGACGGCGGCTACGACACCACGTGCTCCATCTGTCTCTGCGACTACAAGGATACGGAGATGCTGAGGATGATGCCCGAGTGTCGACACTACTTTCACCTCTGCTGCCTCGACCCCTGGCTCAAGCTCAACGGCTCCTGCCCCGTGTGCCGGAACTCCCCCATGCCCACGCCGCTGTCCACGCCGCTGCAGGAGGTGGTGCCGCTCTCGCAGTACGCCGCCGATGCCAGGGGGAGGAGGTGA 573 0.6387 MSSFNSFSPPPPTPYFTNLGFGYSIAIALGVLFLISTLILSSYLCCRTLRHRNNNHHRRRHRHNLHAPDGIVLPRVIFVAEDDDDGARQNDAVSGLEQAVINSYPKFPFTKDGGYDTTCSICLCDYKDTEMLRMMPECRHYFHLCCLDPWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSQYAADARGRR* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1096 190 PANTHER RING-H2 FINGER PROTEIN ATL67 14 187 IPR044289 GO:0016567|GO:0016740
Pvu10g1096 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 166 IPR013083 -
Pvu10g1096 190 CDD RING-H2_PA-TM-RING 118 161 - -
Pvu10g1096 190 SUPERFAMILY RING/U-box 109 166 - -
Pvu10g1096 190 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Pvu10g1096 190 Pfam Ring finger domain 118 161 IPR001841 -
Pvu10g1096 190 SMART ring_2 119 160 IPR001841 -
Pvu10g1096 190 PANTHER RING-H2 FINGER PROTEIN ATL67 14 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1096 Pvu-Chr10 36433815 36434387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1096 9 181 C3H Transcription Factor Family AT5G06490 36.702 6.58e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1096 - - vra:106773185 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1096 10 36433815 36434387 Pvu10g1096 10 36433815 36434387 ECH
Pvu8g0581 8 5094981 5096184 Pvu10g1096 10 36433815 36434387 PCT