Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1085 ATGGTGGACGGCGGCGAATTCGCCGGCACCATTTGCTCGATCTGTTACGAGCCTCTCGACCCCATTACCGAGGACCTCCAATCGGTCTCCATCTGCGGCCACGTCTTTCACGAACTTTGTCTGCAGCAATGGTTCGAATACTGTTCGAAAGGGAAGAAACACACTTGCCCCATTTGCAAGCAGAGTTGCAGGGCCAGCGATGCGTGCAGGCTTTATTTTCAGTCAGTGGGGGACGCGAGCGATGGAGGGAAGCTTCTGAGGAGCTTTGAATCTGAGGAAAATGTTGGGGTTTTGCGTAGGGAAGTTAAGAGATTGGAGGTGAAGGTTTCGGGTCTCACTTCTGAGCTGGAACGGCAAACAAAGGAATTGGAAGGAGTTAAGGAGGAGCTTTGTATTTGCAAGGAGGAGGCAAAGACAGAAACAGCATTAAAGATTGAGGCTCTAAATCAAAAAACGTTCATACAATTCCAGTTACATAAAAAATTAGAGGAACTTGAGAAGTCAACTTTGGAGTCTTTTAGATTAAAAGAAAAAAACATGGCTTTGGCTAAAGAACTTGCCGCATTAAAATTAGTGTCTGATCTGGACATCGATGAAGAGGAGGTTTTGAAGCTTGCCACTTTCGGTAATGGGGCCAACAGTAAAGACACTATAGATACATTGAAAAGATCTCTGGTCATGCGGAACAGGAGTTACAAAGAATTGATGGCCAAGTGCAATGTTCTTGGAAGAGGTGAGGCTCGTTATAGCAAAAAGCTTGAGAAAGCTAAAGAAAAGATCACGAAACTGAAGGCAAAGGTACAAGAACTCGAGACATTAGCTGAAGCAAAAGAAAATGAATATCAGATGTCGCTGAAACTTTCAAAAAGAACGAAGAGTTCAAAGAATTTTGAAAAAAAGTACACAGATTCTGATGCGACAGCTTCCAAATTTCCAGTAGAAAAACCAGGCAAACAAATCTCGGCACCCAAATCTGGAATAAACCTGGCTGCAAACGACAACTGTAAATCTTTTCAATCTTTGAAGATCGAGAACTCCAATGCTACTACAAATAAGGCTGTGAATATTAGTAATGAAACTCCTGATAAAAAGAGAGACTATATCACAATTGATGAAGATGAATTAGAAGCCACTAAAGCTTTGCAAGGATGTTCAAAACACAACAACAAAGAACGAGACATGAATGACATTGCTTGTAGCAAGCCTTCTCTAGCGAAGCTAGAGACCATGTCTGCCACAAAGACCGAAACATTATTGCAAGGAAAATGTACTCTGGCTGAGTCTCCCAGAGTTGATGTTGACATTGACATGACTAACAATTCAGCTGGTCCTATGGATGAAGATGTAACTTTACAAGCCACCATTAACCAACCTGTGGTGAACATTAGAAAGGAGTCACCATTTACGCTTTCAAATTCAGGTCCAGATAATATCTGGTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTCATCGGTTTTTGGGAAAATGGTGCAAGCGTGGACAGAACAGTGAATCATCATCATCTGCAAAAAGATCAAGTAATGGGGATTTAATAGCTGTCGGGGCTGATGGTAGAGGTGGCAGAATAAAAGTTCTAAGAACTCCTACCCAAATCCTCTCGGGTGGAAAGGAAAATTCAGCAAGTTCAAAAAGGTCAAAGCTTGGAGCTAAAACAAGTAGTTTGCATTCCCAGGGGTGTCTGCAGATAGAACACTTTTTTGGGAGAGTCACTCAGTAA 1740 0.423 MVDGGEFAGTICSICYEPLDPITEDLQSVSICGHVFHELCLQQWFEYCSKGKKHTCPICKQSCRASDACRLYFQSVGDASDGGKLLRSFESEENVGVLRREVKRLEVKVSGLTSELERQTKELEGVKEELCICKEEAKTETALKIEALNQKTFIQFQLHKKLEELEKSTLESFRLKEKNMALAKELAALKLVSDLDIDEEEVLKLATFGNGANSKDTIDTLKRSLVMRNRSYKELMAKCNVLGRGEARYSKKLEKAKEKITKLKAKVQELETLAEAKENEYQMSLKLSKRTKSSKNFEKKYTDSDATASKFPVEKPGKQISAPKSGINLAANDNCKSFQSLKIENSNATTNKAVNISNETPDKKRDYITIDEDELEATKALQGCSKHNNKERDMNDIACSKPSLAKLETMSATKTETLLQGKCTLAESPRVDVDIDMTNNSAGPMDEDVTLQATINQPVVNIRKESPFTLSNSGPDNIWFSGGLLGPDGTHRFLGKWCKRGQNSESSSSAKRSSNGDLIAVGADGRGGRIKVLRTPTQILSGGKENSASSKRSKLGAKTSSLHSQGCLQIEHFFGRVTQ* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1085 579 CDD RING-H2 12 60 - -
Pvu10g1085 579 MobiDBLite consensus disorder prediction 539 563 - -
Pvu10g1085 579 MobiDBLite consensus disorder prediction 500 515 - -
Pvu10g1085 579 SMART ringv_2 11 60 IPR011016 GO:0008270
Pvu10g1085 579 Coils Coil 102 129 - -
Pvu10g1085 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 182 IPR013083 -
Pvu10g1085 579 SMART ring_2 12 59 IPR001841 -
Pvu10g1085 579 Coils Coil 246 280 - -
Pvu10g1085 579 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 578 - -
Pvu10g1085 579 MobiDBLite consensus disorder prediction 500 521 - -
Pvu10g1085 579 MobiDBLite consensus disorder prediction 535 563 - -
Pvu10g1085 579 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 578 - -
Pvu10g1085 579 SUPERFAMILY RING/U-box 10 64 - -
Pvu10g1085 579 Pfam Ring finger domain 11 60 IPR001841 -
Pvu10g1085 579 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1085 431 579 C3H Transcription Factor Family AT4G01270 41.875 1.72e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1085 K11985 - gmx:100812811 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1085 10 36211244 36215726 Pvu10g1085 10 36211244 36215726 ECH