Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1068 ATGGCAGCTGTTAGGGCTTCCTCTGTTAGACGAATAGGAAGCACAATCAAGGTTTCTTTCAATATGGAATTAGTTCAGCGCTGTCACTATCACCATAGTGTGTGTGTGAACCTTGCAAGGTTGCCAAGTGATTCACCGAGTCATCCTTATTACAAAAGAGAGTTACAGTCTGCTAAGAATCAGTTCAGTAATTTGGCTTCTGAATCATTTGGAAGCAGTCACCAATTTGGTACTAGAGCCAATTTATCGTTTAAACCTGCATTCTCTAGCTATTGTTTTCGGAGTGCCCTTCCTTTTGCTTCCGCGAGCCATGTGTTGAATCGCCGATCTTATTCGTCGACGGTGGGTGGTGATAAAGGAAGTAGAGATGCTGGTACAGAAGTCGCTGCTGGTTCTGGTGCGAGTGACATGAATACGACTGGTGATTCTGTTGTTGGGGGTGATTGGGCTGAGAGGATTAAAGATGCTTTGAAGAGTGTGGTAGAGTCAGCATCATATGCTGGGGAAAAGGTTAAAGCAACATCTGATGATCTCACTCCATATGCTCAGCAGTTGCTTGATTCACACCCATATTTAGACAAGGTGGTTATTCCAGTTGGTGGTACTTTAACTGCTACTCTAATTGCTTGGTTCTTGATGCCTATGATTTTGAGGAAATTTCACAGATATGCAATGCAAGGTCCCGTTTCTCTATTGCCAGCAAGCATATCTGGAGATCCAGTTCCTTATGAGAAAAGCTTTTGGGGTGCCATGGAGGATCCTATGCGATATTTAGTTACCTTCATGGCATTCTCACAAATTGGTGTAATGGTAGCTCCAACAACTATAACCGCAGAATATCTTGCACCAGTTTGGAGGGGTGCAGTGATAGTTTCGTTTGTATGGTTTTTGCATAGATGGAAAACAAACGTTTTTGCCCGGACATTAACCAGTCAAAGTTTACTTGGACTTGATAGGGAGAAAGTGCTCGCTCTAGACAAAATCTCATCTATTGGTCTATTTGTGATTGGTATAATGGCTTTTGCTGAGGCTTGTGGTGTGGCCGTGCAATCTATTGTTACTGTTGGTGGTATAGGAGGAGTGGCTACTGCTTTTGCTGCCAAGGACATTCTTGGCAACGTGTTTAGTGGTTTATCTATGCAGTTTTCTAAGCCTTTTTCAATTGGAGATACAATAAAAGCAGGCTCGATAGAGGGTCAAGTGGTGGAAATGGGTCTTACTACTACGTCTTTGCTGAGTTCAGAGAAGTTTCCAGTTATTGTTCCAAACTCATTTTTTTCTAGCCAGGTTATTGTGAACAAATCCCGTGCTGAATATCGTGCCATTATAAGCAAAATTCCTCTGCAAACTGAGGATTTAAGTAAGATTCCCCAAATTTCAGATGATGTAAAAAGCATGCTCAGATCAAATGCAAAGGTTTTCCTAGGGAAAGATGTTCCCTACTGTTTCTTATCCCGTATAGAAAGTTCATTTGCAGAATTGACTCTTGGATACAACCTCAAACATATGCGCAAAGATGAACTATACTCGGCTGAACAAGAAATTCTGCTGCTGGCAGTTCAGATCATTAAAAATCATGGGGTTGCTCTTGGCAGCACATGGCAAGAAATGCCTTCTAAATGA 1623 0.4196 MAAVRASSVRRIGSTIKVSFNMELVQRCHYHHSVCVNLARLPSDSPSHPYYKRELQSAKNQFSNLASESFGSSHQFGTRANLSFKPAFSSYCFRSALPFASASHVLNRRSYSSTVGGDKGSRDAGTEVAAGSGASDMNTTGDSVVGGDWAERIKDALKSVVESASYAGEKVKATSDDLTPYAQQLLDSHPYLDKVVIPVGGTLTATLIAWFLMPMILRKFHRYAMQGPVSLLPASISGDPVPYEKSFWGAMEDPMRYLVTFMAFSQIGVMVAPTTITAEYLAPVWRGAVIVSFVWFLHRWKTNVFARTLTSQSLLGLDREKVLALDKISSIGLFVIGIMAFAEACGVAVQSIVTVGGIGGVATAFAAKDILGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEMGLTTTSLLSSEKFPVIVPNSFFSSQVIVNKSRAEYRAIISKIPLQTEDLSKIPQISDDVKSMLRSNAKVFLGKDVPYCFLSRIESSFAELTLGYNLKHMRKDELYSAEQEILLLAVQIIKNHGVALGSTWQEMPSK* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1068 540 Pfam Mechanosensitive ion channel 327 529 IPR006685 GO:0016020|GO:0055085
Pvu10g1068 540 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 112 536 - -
Pvu10g1068 540 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 282 368 IPR011014 GO:0016020
Pvu10g1068 540 Gene3D - 385 433 IPR023408 -
Pvu10g1068 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 112 536 - -
Pvu10g1068 540 SUPERFAMILY Sm-like ribonucleoproteins 369 434 IPR010920 -
Pvu10g1068 540 MobiDBLite consensus disorder prediction 111 142 - -
Pvu10g1068 540 Gene3D - 280 384 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1068 96 536 Mechanosensitive Ion Channel Family AT4G00290 62.585 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1068 K22047 - gmx:100789047 936.021