Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1067 ATGAGACAAGCTGGTGCATATTCAGGGTTACTGTGTGGAGGGGTATCAGGAAGGACAGGACCCCACCCTCTGCCCCTGGCAAGGATCAAGAAGATCATGAAGAAGTCAGGGGATGATGTTAAAATGATATCAGGGGAGGCTCCAATTATTTTCTCCAAGGCTTGTGAGCTCTTCATTGAGGAACTTACTAGAAGGTCATGGATCATGGCCATCCAAGGCAAAAGGAGGACTTTGCACAAAGAGGACTTGACCTCTGCAGTTATAGCCACTGATCTATTTGACTTTTTGATCACTTTGGTTTCCAATTCTGACAGCCATCCACTTGGTGTCCCCACCACCACTACCATGGAGGTAGAAACTATATATTAG 369 0.4607 MRQAGAYSGLLCGGVSGRTGPHPLPLARIKKIMKKSGDDVKMISGEAPIIFSKACELFIEELTRRSWIMAIQGKRRTLHKEDLTSAVIATDLFDFLITLVSNSDSHPLGVPTTTTMEVETIY* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1067 122 SUPERFAMILY Histone-fold 18 96 IPR009072 GO:0046982
Pvu10g1067 122 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 87 IPR003958 -
Pvu10g1067 122 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Pvu10g1067 122 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 106 - -
Pvu10g1067 122 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1067 Pvu-Chr10 35938015 35938383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1067 22 100 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.557 1.04e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pvu10g1067 CBFD_NFYB_HMF 4.6e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1067 - - ccaj:109817175 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1067 10 35938015 35938383 Pvu10g1067 10 35938015 35938383 ECH