Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1056 ATGGAATCTACCAATAAAGCATCCTCTTCTTCCACTCGAACCTCAGGATGTTCATGGTCCAACCATGTTTTCTTGAGTTTCAGGGGTGAGGACACACGCAGAGGTTTCACAGACCATCTCTTCGCTTCACTGGAGAGAAAGGGGATCAAAACTTTCAAGGATGATCATGATCTCGAGAGGGGCAAAGCTATATCAGTGGAACTCATGAAAGCCATCGAAGATTCCATGTTTGCACTCATCATTCTCTCACCAAACTATGCCTCTTCAACATGGTGTTTGGATGAACTTCAAAAGATTGTAGAGTGCGAGAAAGAAGCTTTTCCAATCTTCCATGGTGTAGACCCCTCTGATGTAAGGCATCAAAGAGGGAGCTTTGCCAAGGCCTTCCAAGAGCATGAAGAGAAATTCAGAGAAGACAAAGAGAAGGTGGAAAGATGGAGAGATGCCTTGAGACAAGTTGCAAGTTACTCTGGATGGGACTCCAAGGATCAGCATGAAGCAACACTGATAGAAACAATTGTCGGACACATACAGAAAAAATTAATTCCTAGACTGCCATGTTTCACAGATAATCTTGTTGGAGTTGATTCACGGATGAAAGAACTGAATTCACTTATGGACATATGGTTAAATGATATTCGCTTCATAGGAATATGGGGCATGGGAGGCATAGGTAAGACAACAATTGCTAGATTAGTCTATGAAGCAGTCAAAGAGAAATTCAAGGTTAGTTGCTTTCTTGAAAACATCAGAGAATTGTCTAAGACAAATGGCTTAGTTCACATTCAAAAGGAAATTCTTTCTCATCTTAATGTAAGAAGCAATGATTTTTGTAATCTTTATGATGGGAAAAAGATAATAGCAAACTCTTTAAGCAACAAAAAGGTACTTCTTGTTCTTGATGATGTAAGTGACATAAGCCAATTGGAGAATTTAGGTGGAAAAAGAGAATGGTTTGGTCCAGGAAGCAGACTAATAATCACAACTAGAGATAAGCACCTGCTAAAGACATATGGAGTGGATATGACTTGTAAGGCTAGAGGCTTAGCCCAAAATGAAGCCCTTCAGCTCTTTTGCTTGAAAGCATTTAAACAAGATCAACCTAAAGAAGGGTATTTGAATTTGTGCAAAGGAGTGGTTGAATATGCAAGAGGCCTTCCATTGGCACTTGAGGTATTGGGTTCCCATCTTTGTGGAAGAAGCACTGAGGTTTGGCACAGTGCTTTAGAACAAATAAGAAGCTTTCCACACTCCAAAATTCAAGATACACTGAAAATAAGTTATGACAGTTTGGAACCTACAGAGAAAAAATTGTTCCTAGATATTGCATGTTTCTTCGTAGGGATGGACATAGATGAAGTGGTAAATATCTTAGAAAATTGTGGTGATCATCCCATAATTGGAATTGACATTTTAATTGAAAGATCTTTGGTAACTCTAGATATGACGAAGAATAAGTTGGGGATGCATGATTTGCTACAAGAAATGGGCAGGAATATTGTATATCAAGAATCTCCAAATGACCCAGGGAAACGTAGTAGGTTGTGGTCTCAAAAAGATATTGATTATGTGTTGACAAAAAACAAGGGAACTGATGAAATTCGAGGCATTGTTCTGAACTTAGTTCAACCGTATGATTGTGAAGCACGCTGGAACACAGAATCATTCTCCAAGATAAGTCAGCTAAGGTTACTCAAGTTATGTGATATGCAGCTTCCTCGAGGCCTCAACTGCCTCCCGAGTGCACTAAAAGTTGTACATTGGAGAGGATGTCCTCTGAAAACCCTGCCACTCAGTAATCAACTTGATGAAGTTGTTGACCTCAAATTGCCTTACAGCAAAATAGAACAACTTTGGCATGGGACAAAGCTTCTAGAAAAGCTAAGGTTCATCAATTTGAGCTTTTCCAAGAACCTGAAGCAATCCCCAGACTTTGTTGGGGTTCCAAATCTTGAATCACTGGTTCTTAAAGGTTGCACAAGTTTAACTGAGGTTCATCCATCCCTTGTACGCCACAAGAAACTTGTTTGGTTGAACTTTGAAGACTGCAAAAAGCTCAAAACTCTTCCAAGAAAAATGGAGATGAGTTCCTTGAATGATTTAAATCTTTCTGGTTGCTCTGAATTTAAGTGTCTTCCAGAGTTTGCGGAAAGCATGGAACATTTGTCAGTGCTTTGTTTAGAGGGGACTGCTATAACAAAACTGCCCACATCACTGGGATGTCTAATTGGCCTTTCTCATTTGGATACGAAGAATTGCAAGAATCTTGTTTGCCTTCCAGATACCATTCATAAATTAAGATCCCTCATAGTTCTGAATGTTTCTGGCTGCTCAAAACTTAGTAGCTTGCCAGAGGGTTTGAAGGAAATCAAGTGCTTGGAGGAACTTGATGTAAGTGAAACTGCTATTCAAGAGCTACCTTCATTTGTATTTTATCTGGAAAATCTCAGAGATATCTCAGTTGCTGGGTGCAAGGGGCCAGTATCTAAATCTGTAAATAGCTTTTTTCTCCCCTTTAAGAGGCTGTTTGGGAATCAACAAACTTCTATTGGATTTAGATTACCACCTTCAGCACTAAGTCTACCCTCTTTGAAGAGAATAAATTTAAGTTATTGCAATCTATCTGAAGAGTCATTCCCTGGTGATTTTTGTAGCTTATCTTCATTGATGATTCTAAATCTCACTGGCAACAATTTTGTTAGCTTACCGAGTTGCATTTCCAAACTCGCAAAGCTCGAGCATCTTATCTTAAACTCCTGCAAAAAGCTTCAAACGTTGCCAAAGCTTCCATCAAACATGCGAGGATTGGATGCAAGCAATTGCACTTCATTTGAGATTTCCAAATTCAATCCATCCAAGCCATGCAGTCTCTTTGCATCACCTGCAAAATGGCATTTTCCAAAAGAGCTGGAAAGCGTTTTGGAGAAACTCCATCTTCCCAAAGAAAGATTTGGCATGCTTCTCACAGGGAGTGAAATTCCACCATGGTTTTCCCGTAGTAAAACCGTTTCATTTGCAAAAATATCAGTCCCTGATGATTGCCCAATGAATGAATGGGTGGGATTTGCTTTGTGTTTCCTCTTAGTAAGTTATGTTGTCCCTCCTGATGTGTGCTCTCATGAAGTTGATTGCTACTTGTTTGGACCTAATGGTAAGGTGTTTATCACCTCCAGGAAGTTACCTCCCATGGAGCCATGTGACCCTCACCTTTATATTACCTACCTGTCCTTTGATGAACTGCGTGACATAATTTGTATGGGCAGTGATTACAGGGAAATTGAATTTGTATTAAAAACATATTGTTGTCATTCACTGGAAATAGTGAGGTGTGGGAGTCGTTTGGTATGTAAGCAAGATGTTGAAGATATTTATGGAAATAGTTAG 3384 0.3951 MESTNKASSSSTRTSGCSWSNHVFLSFRGEDTRRGFTDHLFASLERKGIKTFKDDHDLERGKAISVELMKAIEDSMFALIILSPNYASSTWCLDELQKIVECEKEAFPIFHGVDPSDVRHQRGSFAKAFQEHEEKFREDKEKVERWRDALRQVASYSGWDSKDQHEATLIETIVGHIQKKLIPRLPCFTDNLVGVDSRMKELNSLMDIWLNDIRFIGIWGMGGIGKTTIARLVYEAVKEKFKVSCFLENIRELSKTNGLVHIQKEILSHLNVRSNDFCNLYDGKKIIANSLSNKKVLLVLDDVSDISQLENLGGKREWFGPGSRLIITTRDKHLLKTYGVDMTCKARGLAQNEALQLFCLKAFKQDQPKEGYLNLCKGVVEYARGLPLALEVLGSHLCGRSTEVWHSALEQIRSFPHSKIQDTLKISYDSLEPTEKKLFLDIACFFVGMDIDEVVNILENCGDHPIIGIDILIERSLVTLDMTKNKLGMHDLLQEMGRNIVYQESPNDPGKRSRLWSQKDIDYVLTKNKGTDEIRGIVLNLVQPYDCEARWNTESFSKISQLRLLKLCDMQLPRGLNCLPSALKVVHWRGCPLKTLPLSNQLDEVVDLKLPYSKIEQLWHGTKLLEKLRFINLSFSKNLKQSPDFVGVPNLESLVLKGCTSLTEVHPSLVRHKKLVWLNFEDCKKLKTLPRKMEMSSLNDLNLSGCSEFKCLPEFAESMEHLSVLCLEGTAITKLPTSLGCLIGLSHLDTKNCKNLVCLPDTIHKLRSLIVLNVSGCSKLSSLPEGLKEIKCLEELDVSETAIQELPSFVFYLENLRDISVAGCKGPVSKSVNSFFLPFKRLFGNQQTSIGFRLPPSALSLPSLKRINLSYCNLSEESFPGDFCSLSSLMILNLTGNNFVSLPSCISKLAKLEHLILNSCKKLQTLPKLPSNMRGLDASNCTSFEISKFNPSKPCSLFASPAKWHFPKELESVLEKLHLPKERFGMLLTGSEIPPWFSRSKTVSFAKISVPDDCPMNEWVGFALCFLLVSYVVPPDVCSHEVDCYLFGPNGKVFITSRKLPPMEPCDPHLYITYLSFDELRDIICMGSDYREIEFVLKTYCCHSLEIVRCGSRLVCKQDVEDIYGNS* 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1056 1127 ProSiteProfiles TIR domain profile. 19 181 IPR000157 GO:0007165
Pvu10g1056 1127 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 159 IPR035897 -
Pvu10g1056 1127 SUPERFAMILY L domain-like 502 824 - -
Pvu10g1056 1127 Pfam C-JID domain 989 1121 IPR045344 -
Pvu10g1056 1127 Gene3D Ribonuclease Inhibitor 713 950 IPR032675 -
Pvu10g1056 1127 Gene3D - 180 342 IPR027417 -
Pvu10g1056 1127 PRINTS Disease resistance protein signature 215 230 - -
Pvu10g1056 1127 PRINTS Disease resistance protein signature 290 304 - -
Pvu10g1056 1127 PRINTS Disease resistance protein signature 383 397 - -
Pvu10g1056 1127 PRINTS Disease resistance protein signature 764 780 - -
Pvu10g1056 1127 Gene3D - 16 179 IPR035897 -
Pvu10g1056 1127 Gene3D Ribonuclease Inhibitor 547 712 IPR032675 -
Pvu10g1056 1127 Pfam TIR domain 22 181 IPR000157 GO:0007165
Pvu10g1056 1127 SMART till_3 20 156 IPR000157 GO:0007165
Pvu10g1056 1127 SUPERFAMILY L domain-like 757 945 - -
Pvu10g1056 1127 Pfam NB-ARC domain 211 431 IPR002182 GO:0043531
Pvu10g1056 1127 Gene3D - 348 432 IPR042197 -
Pvu10g1056 1127 SMART LRR_typ_2 719 742 IPR003591 -
Pvu10g1056 1127 SMART LRR_typ_2 861 885 IPR003591 -
Pvu10g1056 1127 SMART LRR_typ_2 886 909 IPR003591 -
Pvu10g1056 1127 SMART LRR_typ_2 790 813 IPR003591 -
Pvu10g1056 1127 Pfam Leucine Rich Repeat 606 623 IPR011713 -
Pvu10g1056 1127 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 190 734 - -
Pvu10g1056 1127 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 721 1121 - -
Pvu10g1056 1127 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 190 734 IPR044974 GO:0006952
Pvu10g1056 1127 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 721 1121 IPR044974 GO:0006952
Pvu10g1056 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 442 IPR027417 -
Pvu10g1056 1127 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1056 Pvu-Chr10 35860677 35870244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1056 28 819 WRKY Transcription Factor Family AT4G12020 32.143 2.83e-109 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1056 - - gmx:100815486 1822.36