Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1055 ATGACTCCAAAAGGATTTGAATTGACTCTTTATTCTCAACATCTATATATAGAAGATCTTTTTGAAGAAAAAAGGACACAGACAAAAACCGTGTCTCTCACATCAACATATTCTTCTCCGATGGGTTTTCCGGTGGGTTACGCGGAGGTGTTCTTCCCCAACCCCTTCCTCCACACACTGGCCTTCCTCGGCCTCCTCCGAAACCTCGTCTTCTTTCTCTTCCACCTCCTCGGACTCTCCGACTTCCTCGAAACCGAGGTCGCATGGCCGGACCCCCGCACCTCCGCTGCCACCGCCGCCGTCTCCAGGCCCCCCTCCGTGTCGGCGCTACTTATCCGGGACATCCTCCCCGTCGCCAAGTTCGGGGAATCCGGAGAGAACTCCTGCGCCTGCGCCGTCTGTCTGTTCGAGTTCTCCGAGGAGGAGGAGATTCGGTGTATGCGGAACTGCAAACACATTTTCCACCGCGCCTGCGTGGACCGTTGGATCGATCACGATCAAAAAACGTGCCCTCTGTGTAGGACCCCCTTTGTGCCCGATGACATGCTTGATGATTATAATCAACGCCTCTGGGCTGCTTCTGGGATCAACGAGTTCTACGCCGATTACACTTCTTCCTTCTGA 624 0.5417 MTPKGFELTLYSQHLYIEDLFEEKRTQTKTVSLTSTYSSPMGFPVGYAEVFFPNPFLHTLAFLGLLRNLVFFLFHLLGLSDFLETEVAWPDPRTSAATAAVSRPPSVSALLIRDILPVAKFGESGENSCACAVCLFEFSEEEEIRCMRNCKHIFHRACVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAASGINEFYADYTSSF* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1055 207 SUPERFAMILY RING/U-box 111 181 - -
Pvu10g1055 207 ProSiteProfiles Zinc finger RING-type profile. 131 174 IPR001841 -
Pvu10g1055 207 PANTHER RING ZINC FINGER PROTEIN-RELATED 41 203 - -
Pvu10g1055 207 SMART ring_2 131 173 IPR001841 -
Pvu10g1055 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 179 IPR013083 -
Pvu10g1055 207 PANTHER BRH1 RING FINGER PROTEIN 41 203 - -
Pvu10g1055 207 Pfam Ring finger domain 130 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1055 Pvu-Chr10 35797672 35799722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1055 41 206 C3H Transcription Factor Family AT1G63840 45.087 3.57e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1055 K16281 - gmx:100790975 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0613 8 5424167 5425749 Pvu10g1055 10 35797672 35799722 PCT