Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1053 ATGGCCCAGAAGATAATGAGTCCTTCTTTAGAAACTCTACTTATAATCAATATGGGTGCAAAATTTCCTGCAAGTGCGCTGAGAGAGCAGGAAGTTCAAGATTATCATGAGAGGGAAAGGCAAAACATTCAGAAGACTATGGATGCCTATCTTTATATCTGTCAAAAAATGGGGGTGCGGGCAGGGAAACTACACATTGAAATGGATAGTGTAGAAAAAGGGTTTGTAGAACTCATCCACCAGTATGGCATACAGAGGCTTGTAATGGGAACAGCATCTGATAAGTACCATTCTAGGAGAATGATATCCCTCAAATCTAAGAAAGCTATATATGTATGTGAACAAGCTCCAGCTTCATGTCATATACAGTTTATCTGCAACGGGTACCTCATACACACAAGATTGGATAGAGGGAACGTAGAGGTCGTATCTCCTTCTGTGCAGCTAATAGCAAACTCTGAAGTTGGGCATTCACCTAACATGGGATCGCCATCCACAGTGCAAGGGCAAAATCGTTGGATAAAACTAAGTAATCCCGGAAAAGAGTTATTTCGTAGAGTTAGGACTATCAGTGATGGAGATGGGAGGAGCATTGGATCTGTTTCTTCTTTAGAAGGGTTCTTAACTCCTCAGAGAAAGTTCGGTAAAGAAGCAAGTTGTGATGAGGTAGGTGGGCAGTCACGGCGGAGTCCTTCAGTATCCTCAATGTGCTGTGAGAGTTGTTCGGTTGATCCATATTTTATTAACAATGGCAGTGAGAATGTAGAATTGTCATTGAATGACTTTTCTATGAATAACAAGGATCTTCATCATTCACCATCTCCAAGTGATGGAGGAATGGATGATGCTCTCTATGCTCAACTTGAACAGGCAATGGCTGAGGTTGCGAATGCTAAGCATGATGCATATCAAGAAACTTTTAAGCGTGTTAAAGCAAAAGGAGATTCCATTGATGCTATACGCAACGAAGAAGTACAGAAAGCAAATGAAGAACTTGAGGATATGAAGAGGCAGATAAACAAAGTTAATGAGGAACTCCAAGTCGCCTTAGATCAGAAAATATCTCTAGAGAATCGAATTGCATCAACTGAACTTATTATAAAGGAGTTGGAGAAGAAGAATATATCTGCTGCTGAGCTGTCTCAAAAGTACAAGAATGAAGTAGATGATTTGCAAATGCAGCGTGATAATGCATTGGGAGAGGCCGAGGAGTTAAGGAGAACACAAGGGGAAGCCTCAAGCACGCACGGGCTTCAACCCTTCTCAGAATTCTCCTTTTCAGAGATTAAAGAAGCAACAAGAAACTTCAATCCATCCCTCAAGATTGGACAAGGAGGATATGGAAGTATATTTAGAGGTATCTTACGTCACACTGAGGTGGCTATAAAAATGTTGAGTCCTGATAGCACCCAAGGTCCAGTGGAGTTTCAACAAGAGGTAGAAGTATTGAGCAACTTAAGGCACCCCAACCTTGTGACACTTATAGGGTCCTGCCCAGAATCTTGGACTCTTGTATATGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTAAACTGCAAGGATAACACACCTCCATTATCATGGCAAACTAGAATTCGCGTTGCTGCAGAAGTCTGCTCGGCTGTCATCTTTCTTCACTCAAGTAAACCTCACAGCATAGCACATGGTGATTTAAAACCAGGCAACATTCTCCTTGATGCAAACTTTGTAAGCAAGCTCGGAGACTTTGGAATCTGTCGTATATTATCTTGTCAAGAGGGTTCAAGTAGCAGCACTGCACAGTTTTGGAGAACTGTTCCAAAGGGAACTTTTGTGTACGTGGATCCTGAATTCCTTACTTCTGGTGAACTCACACCAAAGTCAGATGTTTATTCATTTGGAATCATTCTATTGAGATTGATCACTGCGAAACCTGCTTTGGAAATAGCAAAGGAAGTGCAATATGCATTAGATAGTAGAAAGTTGAAATCCATCTTGGATCCATTGGCTGGAGACTGGCCATTTATGCTAGCTGAAGAGTTGGTTCGTTTGGCTTTGAGGTGTTGTGTGATGAATAGAAGGAACAGACCAGATTTTTATCCAGATGTTTGGAGAATACTGGAACCAATGAGGGCTTCTTGTGGAAGCAGCAACACCTTTCAACAGGGTTCTCAAGGAAAATGCCAACCTCCTCCATATTTCATTTGTCCAATCTCTCTGGAAGTCATGCAAGATCCACACGTGGCTGCAGATGGTTTTACTTATGAAGCTGAGGTCATACGTGAATGGCTGAAAAATGGTCGACACGTTTCACCAAGGACAAACTCTAAGTTTGCACATCACCACCTCATTCCCAACCACTCTCTTCGCCATGCAATTCAGGACTGGCTTCAAACTCACTGA 2385 0.4197 MAQKIMSPSLETLLIINMGAKFPASALREQEVQDYHERERQNIQKTMDAYLYICQKMGVRAGKLHIEMDSVEKGFVELIHQYGIQRLVMGTASDKYHSRRMISLKSKKAIYVCEQAPASCHIQFICNGYLIHTRLDRGNVEVVSPSVQLIANSEVGHSPNMGSPSTVQGQNRWIKLSNPGKELFRRVRTISDGDGRSIGSVSSLEGFLTPQRKFGKEASCDEVGGQSRRSPSVSSMCCESCSVDPYFINNGSENVELSLNDFSMNNKDLHHSPSPSDGGMDDALYAQLEQAMAEVANAKHDAYQETFKRVKAKGDSIDAIRNEEVQKANEELEDMKRQINKVNEELQVALDQKISLENRIASTELIIKELEKKNISAAELSQKYKNEVDDLQMQRDNALGEAEELRRTQGEASSTHGLQPFSEFSFSEIKEATRNFNPSLKIGQGGYGSIFRGILRHTEVAIKMLSPDSTQGPVEFQQEVEVLSNLRHPNLVTLIGSCPESWTLVYEYLPNGSLEDRLNCKDNTPPLSWQTRIRVAAEVCSAVIFLHSSKPHSIAHGDLKPGNILLDANFVSKLGDFGICRILSCQEGSSSSTAQFWRTVPKGTFVYVDPEFLTSGELTPKSDVYSFGIILLRLITAKPALEIAKEVQYALDSRKLKSILDPLAGDWPFMLAEELVRLALRCCVMNRRNRPDFYPDVWRILEPMRASCGSSNTFQQGSQGKCQPPPYFICPISLEVMQDPHVAADGFTYEAEVIREWLKNGRHVSPRTNSKFAHHHLIPNHSLRHAIQDWLQTH* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1053 794 Gene3D Phosphorylase Kinase; domain 1 407 508 - -
Pvu10g1053 794 PANTHER OS02G0152300 PROTEIN 15 793 - -
Pvu10g1053 794 Pfam Protein kinase domain 440 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu10g1053 794 ProSiteProfiles U-box domain profile. 723 794 IPR003613 GO:0004842|GO:0016567
Pvu10g1053 794 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 722 794 IPR013083 -
Pvu10g1053 794 SMART Ubox_2 727 790 IPR003613 GO:0004842|GO:0016567
Pvu10g1053 794 Pfam U-box domain 725 794 IPR003613 GO:0004842|GO:0016567
Pvu10g1053 794 Coils Coil 285 305 - -
Pvu10g1053 794 CDD STK_N 22 128 - -
Pvu10g1053 794 ProSitePatterns Serine/Threonine protein kinases active-site signature. 554 566 IPR008271 GO:0004672|GO:0006468
Pvu10g1053 794 ProSitePatterns Protein kinases ATP-binding region signature. 442 463 IPR017441 GO:0005524
Pvu10g1053 794 SUPERFAMILY Protein kinase-like (PK-like) 415 694 IPR011009 -
Pvu10g1053 794 SMART serkin_6 436 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu10g1053 794 ProSiteProfiles Protein kinase domain profile. 436 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu10g1053 794 Coils Coil 318 408 - -
Pvu10g1053 794 SUPERFAMILY RING/U-box 714 794 - -
Pvu10g1053 794 CDD RING-Ubox_WDSUB1_like 728 769 - -
Pvu10g1053 794 PANTHER U-BOX KINASE FAMILY PROTEIN 15 793 - -
Pvu10g1053 794 Gene3D Transferase(Phosphotransferase) domain 1 509 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1053 Pvu-Chr10 35737833 35742315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1053 14 794 U-box Gene Family AT2G45910 48.864 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pvu10g1053 Pkinase 4.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1053 - - var:108321203 1258.43