Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1049 ATGGGAGGTTGCTGTTGTTCTGCTAGGAAAACTCACCTGCATGGGACACCAGTGTATTACTATTGCCCACCAACTTTAGAAGAGCGTGAGTCTTTAACATCTAATGATGGTGCCACTACTTCACTCACTGCTGGATTGCTGCTAGGCTTGAACCTGGAAACTTCTTCCCCTGATACATACCAGCCCCCTCCTGCACCTCTACCATATGATATGGTCCTGGGAGGTCCAGCATCAACAAAATCTGAATCAGGCAGAGAAACAGTTAGTGCTACTAGCTTTGAGACATTAATTACATCTGAAGATCTTGAAGAATCTGACTGTAAAGCTAAATCTATTTCAACACCTATATCTCCAAGCAAGGCAGAACTGTCAAAATCAAAAGAATTTCATGCATCAGTGACAGAAGAAGAGGACGACTGTCCAATTTGTCTTGATGAATATGATGTTGAGAATCCAAAAACTCTGACAAAATGTGAACACCACTTTCACTTGTCTTGCATTCTTGACTGGATGGAAAGAAGTGACTTCTGTCCTATATGTGATCAGGAGATGATATTTGACCAGACACTGAACTAG 576 0.4184 MGGCCCSARKTHLHGTPVYYYCPPTLEERESLTSNDGATTSLTAGLLLGLNLETSSPDTYQPPPAPLPYDMVLGGPASTKSESGRETVSATSFETLITSEDLEESDCKAKSISTPISPSKAELSKSKEFHASVTEEEDDCPICLDEYDVENPKTLTKCEHHFHLSCILDWMERSDFCPICDQEMIFDQTLN* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1049 191 Pfam Ring finger domain 138 180 IPR001841 -
Pvu10g1049 191 SMART ring_2 140 180 IPR001841 -
Pvu10g1049 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 191 - -
Pvu10g1049 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Pvu10g1049 191 SUPERFAMILY RING/U-box 133 187 - -
Pvu10g1049 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 187 IPR013083 -
Pvu10g1049 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1049 Pvu-Chr10 35633283 35636358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1049 1 191 C3H Transcription Factor Family AT4G00335 57.068 4.21e-75 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1049 - - gmx:100804435 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0616 8 5455835 5459619 Pvu10g1049 10 35633283 35636358 PCT