Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu10g1049 | ATGGGAGGTTGCTGTTGTTCTGCTAGGAAAACTCACCTGCATGGGACACCAGTGTATTACTATTGCCCACCAACTTTAGAAGAGCGTGAGTCTTTAACATCTAATGATGGTGCCACTACTTCACTCACTGCTGGATTGCTGCTAGGCTTGAACCTGGAAACTTCTTCCCCTGATACATACCAGCCCCCTCCTGCACCTCTACCATATGATATGGTCCTGGGAGGTCCAGCATCAACAAAATCTGAATCAGGCAGAGAAACAGTTAGTGCTACTAGCTTTGAGACATTAATTACATCTGAAGATCTTGAAGAATCTGACTGTAAAGCTAAATCTATTTCAACACCTATATCTCCAAGCAAGGCAGAACTGTCAAAATCAAAAGAATTTCATGCATCAGTGACAGAAGAAGAGGACGACTGTCCAATTTGTCTTGATGAATATGATGTTGAGAATCCAAAAACTCTGACAAAATGTGAACACCACTTTCACTTGTCTTGCATTCTTGACTGGATGGAAAGAAGTGACTTCTGTCCTATATGTGATCAGGAGATGATATTTGACCAGACACTGAACTAG | 576 | 0.4184 | MGGCCCSARKTHLHGTPVYYYCPPTLEERESLTSNDGATTSLTAGLLLGLNLETSSPDTYQPPPAPLPYDMVLGGPASTKSESGRETVSATSFETLITSEDLEESDCKAKSISTPISPSKAELSKSKEFHASVTEEEDDCPICLDEYDVENPKTLTKCEHHFHLSCILDWMERSDFCPICDQEMIFDQTLN* | 192 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu10g1049 | 191 | Pfam | Ring finger domain | 138 | 180 | IPR001841 | - | |
Pvu10g1049 | 191 | SMART | ring_2 | 140 | 180 | IPR001841 | - | |
Pvu10g1049 | 191 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 191 | - | - | |
Pvu10g1049 | 191 | ProSiteProfiles | Zinc finger RING-type profile. | 140 | 181 | IPR001841 | - | |
Pvu10g1049 | 191 | SUPERFAMILY | RING/U-box | 133 | 187 | - | - | |
Pvu10g1049 | 191 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 187 | IPR013083 | - | |
Pvu10g1049 | 191 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED | 1 | 191 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu10g1049 | Pvu-Chr10 | 35633283 | 35636358 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu10g1049 | 1 | 191 | C3H Transcription Factor Family | AT4G00335 | 57.068 | 4.21e-75 | 222 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu10g1049 | - | - | gmx:100804435 | 343.584 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pvu8g0616 | 8 | 5455835 | 5459619 | Pvu10g1049 | 10 | 35633283 | 35636358 | PCT |