Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1045 ATGCAATCCGGCGGTGGGTCCGGCCGGAACCCCGGAGTGGGGCGGGCGGTGACGTCGTCGGCCGCGGCGTCGCCGACTTCTTCGTCTTCGGCGTCGCAGTTGGGGTTGGACTCTATGCAGCAGCAGCAGCAGCAGCAGATGGGTTCTAGGCAGTCATTTCAACAGCAACTGCTTAGAAAACCTGAAGGAAATGAAGCGTTTTTAGCTTATCAAGCAGGGCTTCAAGGGGTATTTGGGAGTAACAGTTTCTCATCTCCTAGTGCCATGCAACTGCCTCAGCAGTCTCGAAAATTGCATCTTGGTTCCAACCAAGAAACCCAGCTAAGGGGTCAAGGTATTGAGCAGCAGATGCTAAATCCTGTCCATCAAGCATACCTTCAATATGCAATCCAGGCTGCACAACAAAAGTCTACTTTGGGAATTCAGTCACAGCAGCAAACTAAAATGGGAATGTTGAACTCTGCATCTCTCAAGGAACAGGAGATGCGTATGGGAAATTTGAAAATGCAGGAAATTATGTCTATGCAGGCAGCGAATCAATCTCAAGGATCATCCTCTAGGAATTCATCTGAGCTTGTTGCTCGTGGGGACAAGCAAATGGAGCAAGGACAACAAATAGCACCTGATCAGAAGAGTGAAGGAAAGCCTTCAACCCAGGGACCAACTATTGGGCATTTAATTCCTGGGAATATGATAAGACCCCCAATGCAAGCACCAGAAACACAGCAGGGCATCCAAAATGTTGTAAACACCCAGATTGCGGTATCTGCACAATTGCAGGCGATGCAGGCATGGGCACGTGAGCGTAATATTGATTTATCACATCCTGCAAATGCGCACTTAATGGCACAGCTCATTCCACTGATGCAGTCAAGGATGGTCTCACAATCAAAGGTCAATGAGAGCAACATTGGTACTCAGTCATCACCTGTCCCTGTTTCAAAGCAGCAGGTTACTTCTCCAGCAGTTGCAAGTGAGAGTTCAGCACATGCCAATTCTTCGAGTGACATGTCTGGACAGTCAGGTTCTTCAAAAGCCAGGCAGACAGTTCCACCCAGCCATCTTGGCTCAACAACAACTGCTGGTATAGCTGGTAACTCCAGTGAAATGGCAACACAACAATTCAGTGTTCACGGTAGAGAATCTCAAACCCCTCTAAGGCAGCCAGTAGCACTTGGAAATCGAATGCCCTCTATGCATCAGCAGTCTTCTGCCAACACGAGCCTAGGTGCAGACCATCCATTAAATGGAAAAAATTCATCATCTGGTCCAGAACCTCCTCAAATGCAGTACATGAGGCAGTTAAACCAATCTGCTTCTCAGGCTGGAGGTCCATCGAATGAAGGGGGTTCAGGAAATCTATCCAAATCTCAAGGACCCCCAGCTCAGATGCCTCAGCAACGAACCGGTTTTACAAAACAACAGCTACATGTGCTAAAAGCACAGATACTGGCATTTAGGCGGCTGAAGAAAGGGGAAGGTACTCTGCCTCAAGAACTTCTTAGGGCTATTGTTCCACCATCTCTTGAGACACAGGCACAACAGCCTAATCATTCTGTAGGTGGACAGAACCAAGACAAATCTACTGGAAATATTGTGGCAGAACAAGCAAGCCACATTGAATCCAATGCCAAGGAGTCACAATCTGTCCCTGCTATTAATGGTCAAAGTTCTTTAAAGCAGGAATCATTTGTCAGAGATGAGAAATCCATTATACCCCCAGTCCATGCTCAAGCTGTTTCACCACCTGTGTCAAAGGAATCTGCTCCAACATTATCTGCTGGAAAGGAAGAGCAGAAATCAGTTGGATCCTCGGTTAAGTTGAACCAGGACAGTGAACGTGGAAACAACACTACTCCTGTTAGAAACGAGTTAGCATTAGATAGGGGAAAGGCTATTGTGTCACAGGCTCCTGTATCTGACGCAATGCAAATTAAGAAACCTGCACAAGCTAGCACTGTTTCCCAGCCAAAGGATGTGGGATCGACTAGAAAATATCATGGACCTTTATTTGATTTTCCATTCTTTACTAGGAAACATGATTCTTTTGGTTCATCAATGATGCTAAATAACAACAATTTGTCACTGGCATATGATGTCAAGGATCTTCTTTTTGAGGAAGGAATGGAAGTACTTAACAAAAAAAGGACAGAAAATTTAAAGAAGATCGAAGGTTTATTGACAGTAAACTTAGAGAGGAAAAGAATTAGGCCAGATCTTGTTTTGAGGCTGCAAATTGAAGAGAAAAAGCTTCGCCTTGTAGATCTTCAGGCACGGTTAAGGAATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGAAAGTTTGTTAGGCTGTGTGAACGTCAGCGCATGGAGCTTGCTAGACAAGTGCAGGCATCTCAGAGAGCAGTTAGGGAGAAGCAACTCAAATCAATATTTCAGTGGCGCAAGAAGCTGCTTGAGGCTCACTGGACCATCCGTGATGCCCGTACTGCCCGCAACAGGGGGGTTGCAAAATATCATGAGAAGATGTTGCGGGAGTTCTCAAAACGGAAAGATGATGACAGAAACAAAAGGCTGGAAGCCTTAAAAAACAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAAACTAGCATCCCTGGTGATGCTGCAGAGAGATACGCTGTTCTTTCAACTTTCTTAAGCCAGACTGAAGAGTATCTACACAAGTTAGGAAGTAAGATAACGGCTGCTAAAAATCAACAGGAAGTGGAGGAAGCAGCAAAAGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCAGCTGCAGCTTGTGCTGGAGAGGAAGTGATGATTAGAAATCGCTTTCTGGAGATGAATGCCCCTAGAGACAGTTCGTCTGTCAACAAATATTACAACCTTGCTCATGCTGTGAGTGAAACAGTCATAAGGCAACCATCAATGTTACGAGCTGGAACATTGAGAGACTATCAGCTTGTTGGTTTGCAATGGATGCTTTCGTTGTATAACAACAAGTTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGCAAAACTGTGCAGGTTATGGCATTGATTGCTTACTTGATGGAATTTAAAGGAAACTATGGCCCACATCTTATAATAGTACCGAATGCTGTTCTGGTTAACTGGAAGAGTGAGCTTTATACTTGGTTACCATCTGTTTCTTGCATTTTTTATGTTGGAAGCAAGGATCACCGGTCAAAATTATTTTCCCAAGAGGTTTGTGCTATGAAATTTAATGTCCTCGTGACTACTTACGAGTTCATCATGTATGACCGGTCAAAACTATCAAAAATCGACTGGAAGTATATCATAATTGATGAAGCACAGAGAATGAAGGATAGAGATTCTGTTTTAGCTCGTGACCTTGATAGATATCGTTGCCAAAGACGTCTGCTTTTGACAGGAACACCATTACAGAATGATTTGAAAGAACTCTGGTCTCTCTTAAATTTACTTCTTCCTGAAGTTTTCGATAATAGGAAAGCCTTTCATGATTGGTTCTCTAAACCATTTCAAAAGGAAGGTCCCACTCAAAATGTAGAGGATGATTGGCTTGAGACAGAGAAAAAAGTTATTATTATCCATCGACTTCATCAGATTTTGGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGATGTTGAAGGCTCCCTTCCACCAAAGGTTTCCATAGTTTTAAAATGTAAAATGTCAGCTGTCCAAAGTGCCGTTTATGACTGGGTCAAATCGACTGGTACCCTTCGTCTTGATCCTGAGGATGAGAAACGCAAGCTTCATAGGAATCCATCATATCAGGTGAAGCAATATAAAACTTTAAACAACAGATGCATGGAGCTGCGTAAGACTTGCAATCATCCATTGCTTAATTACCCATTCTTCAGTGACCTATCCAAGGAATTCATTGTAAGATCTTGTGGAAAATTGTGGATCCTGGATAGGATTCTCATAAAACTTCAGAGAACTGGGCATCGAGTTCTACTTTTCAGTACCATGACAAAACTTCTAGATATCTTGGAAGAATATCTACAGTGGCGAAGACTTGTTTACAGAAGAATTGATGGGACAACAAGTTTGGAAGACCGTGAATCAGCTATAGTGGACTTCAATAGCCCTGATTCAGACTGTTTCATCTTTCTGCTTAGTATTCGAGCTGCTGGACGAGGGCTTAACCTTCAGTCTGCTGACACGGTTGTCATCTATGATCCTGATCCTAACCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCACATCGTATTGGACAGACAAGAGAAGTCAAAGTTATATATATGGAAGCTGTCGTTGACAAAATCTCTAGTCATCTAAAGGAGGATGAGCTGAGAAGTGGAGGCACTGTTGATATGGAGGATGAACTTGCAGGTAAGGACCGCTACATTGGGTCCATTGAGAGCCTCATTAGGAACAATATTCAACAATATAAGATAGATATGGCTGATGAGGTTATTAATGCTGGACGGTTTGATCAAAGAACAACACATGAAGAGAGGCGATTGACATTGGAGACATTATTACATGATGAAGAAAGGTATCAAGAAACTGTCCACGATGTTCCCTCACTACAGGAGGTAAATCGCATGATTGCCAGAAGTAAAGAGGAAATTGAACTGTTTGATCAAATGGATGATGAATTTGATTGGATTGAAGAGATGACACGATATGATAATGTGCCTAAGTGGCTTCGAGCCAATACAAGAGAAGTAAATACTGCTATTGCTGCTCTATCAAAAAGACCATCAAAGAACACTTTATTGGGTGGTAATATTGCCATGGAATCAAGTGAATTTGGTTCTGAAAGAAAAAGAGGACGACCAAAGGGAAAAAAACATCCTAATTATAAAGAGTTGGATGATGAAATTTTGGAATACTCTGAAGTAAGCTCTGATGAAAGAAATGGATATGCACATGAAGAAGGGGAAATAGGAGAATTTGATGATGACGGATATAGTGTAGCTGATGGAGCTCAGACTATTGATAAAGATCATTTGGAAGATGGTTTGCTTGGTGATGCTAGATTTGAATTTCCTCAATCCTTAGATAGTGCTAGAAATACTCAGATGGTTGAAGAAGCTGGTTCCTCGGGGTCATCCTCGGACAGTCAAAGATTGACACAGGTGGTATCACCATCAGTCTCCTCTCAGAAATTTGGTTCCCTCTCTGCATTAGATGCCCGGCCAGGTTCCATTTCAAAAAGGATGACAGATGAGTTAGAGGAAGGGGAAATTGCTGTATCTGGTGATTCTCACATGGACCATCAACAGTCTGGAAGTTGGATTCATGATCGTGAGGAAGGTGAGGATGAGCAAGTTCTGCAGAAACCAAAGATTAAACGCAAACGCAGTCTTCGTGTTCGACCCCGACATCCCACTGAAAGACCTGAAGAAAAATCTGGTAGTGAAATGACATCTCATTTGGCAGTCCAAGCAGACCACAAATATCAAGCGCAACTTAGGACTGACCCAGAATCCAAAGCTCTTGGTGACTCAAATGCCAGCAGGCATGAACAAAACACACCATCATTAAAAAATAAACGAACTTTTCCTTCAAGGAGAATAGCCAATACATCCAAATTGCAGGGATCACCGAAGTCTAGTCGGTTGAATTGCATGTCTTTACCTTCACAAGATGGTGGTGAACACTCCAGAGAAAGCTTGGAAGGGAAACCTATTAGTGTTAGTGGATCTTCAGCTCATGGCACTAAGATGACTGAAATTATCCAGAGAAGGTGCAAAAATGTAATTAGCAAGCTCCAAAGGAGAATAGACAAGGAAGGCCATGAGATTGTACCATTGTTAACAGATTTGTGGAAGAGGATTGAAAATTCTGGAAACAGCCTGTTAGATCTACGAAAAATTGATCAACGAATTGATAAATTTGAGTATAATGGAGCAACAGAGCTTGTATTTGATGTGCAGTTCATGTTGAAGAGTGCAATGCATTTTTATGGTTTTTCACATGAGGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGATATCTTGAAAATTGCCTTCCCTGATACGGACTTTCGAGATGCAAGAAGTGCACTTTCTTTCTCCGGTCAAGCTGCTACTGGTACAGTAGCATCCCCAAGGCAGGCGTCTGTTAGCCAAAGCAAGAGGCACAGGCTAATAAATGAAATGGAAACTGAGTCATACCCTTCACAGAAGTCACTGCAACGTGGATCAGCTTCTAGTGGTGAAAACAACAGGATTAAAGTCCATTTGCCACCGAGGGAATCAAGAACTGGAAGCGGTGGGGGCAGCAGCACCAGGGAGCAACCTCAGCAGGAGGATTCTTCTCTGCTCGCTCATCCAGGTGAACTGGTTGTATGCAAGAAGAGAAGAAATGACAGGGAGAAATCTCTGGCGAAATCCAAGACTGGTCCTGTTTCACCATCTAGCATGAGAAGTCCAGGGTCATTGAAGGATGCTAGATTAACTCAACAGGCTTCCCATGCACAAGGGTGGGCTGGGCAGCCATCTCAACAGCCGAATGGATCTGGTGGCTCAGTTGGCTGGGCAAACCCTGTAAAGAGGCTAAGAACAGATTCTGGGAAGAGAAGACCAAGCCATACATAG 6654 0.4339 MQSGGGSGRNPGVGRAVTSSAAASPTSSSSASQLGLDSMQQQQQQQMGSRQSFQQQLLRKPEGNEAFLAYQAGLQGVFGSNSFSSPSAMQLPQQSRKLHLGSNQETQLRGQGIEQQMLNPVHQAYLQYAIQAAQQKSTLGIQSQQQTKMGMLNSASLKEQEMRMGNLKMQEIMSMQAANQSQGSSSRNSSELVARGDKQMEQGQQIAPDQKSEGKPSTQGPTIGHLIPGNMIRPPMQAPETQQGIQNVVNTQIAVSAQLQAMQAWARERNIDLSHPANAHLMAQLIPLMQSRMVSQSKVNESNIGTQSSPVPVSKQQVTSPAVASESSAHANSSSDMSGQSGSSKARQTVPPSHLGSTTTAGIAGNSSEMATQQFSVHGRESQTPLRQPVALGNRMPSMHQQSSANTSLGADHPLNGKNSSSGPEPPQMQYMRQLNQSASQAGGPSNEGGSGNLSKSQGPPAQMPQQRTGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLETQAQQPNHSVGGQNQDKSTGNIVAEQASHIESNAKESQSVPAINGQSSLKQESFVRDEKSIIPPVHAQAVSPPVSKESAPTLSAGKEEQKSVGSSVKLNQDSERGNNTTPVRNELALDRGKAIVSQAPVSDAMQIKKPAQASTVSQPKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMLNNNNLSLAYDVKDLLFEEGMEVLNKKRTENLKKIEGLLTVNLERKRIRPDLVLRLQIEEKKLRLVDLQARLRNEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRAVREKQLKSIFQWRKKLLEAHWTIRDARTARNRGVAKYHEKMLREFSKRKDDDRNKRLEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSTFLSQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAHAVSETVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYTWLPSVSCIFYVGSKDHRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGPTQNVEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLKCKMSAVQSAVYDWVKSTGTLRLDPEDEKRKLHRNPSYQVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKISSHLKEDELRSGGTVDMEDELAGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEIELFDQMDDEFDWIEEMTRYDNVPKWLRANTREVNTAIAALSKRPSKNTLLGGNIAMESSEFGSERKRGRPKGKKHPNYKELDDEILEYSEVSSDERNGYAHEEGEIGEFDDDGYSVADGAQTIDKDHLEDGLLGDARFEFPQSLDSARNTQMVEEAGSSGSSSDSQRLTQVVSPSVSSQKFGSLSALDARPGSISKRMTDELEEGEIAVSGDSHMDHQQSGSWIHDREEGEDEQVLQKPKIKRKRSLRVRPRHPTERPEEKSGSEMTSHLAVQADHKYQAQLRTDPESKALGDSNASRHEQNTPSLKNKRTFPSRRIANTSKLQGSPKSSRLNCMSLPSQDGGEHSRESLEGKPISVSGSSAHGTKMTEIIQRRCKNVISKLQRRIDKEGHEIVPLLTDLWKRIENSGNSLLDLRKIDQRIDKFEYNGATELVFDVQFMLKSAMHFYGFSHEVRTEARKVHDLFFDILKIAFPDTDFRDARSALSFSGQAATGTVASPRQASVSQSKRHRLINEMETESYPSQKSLQRGSASSGENNRIKVHLPPRESRTGSGGGSSTREQPQQEDSSLLAHPGELVVCKKRRNDREKSLAKSKTGPVSPSSMRSPGSLKDARLTQQASHAQGWAGQPSQQPNGSGGSVGWANPVKRLRTDSGKRRPSHT* 2218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1045 2217 CDD Bromodomain 1928 2025 - -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 573 620 - -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 584 620 - -
Pvu10g1045 2217 Gene3D - 987 1235 IPR038718 -
Pvu10g1045 2217 SUPERFAMILY Bromodomain 1969 2031 IPR036427 GO:0005515
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 176 195 - -
Pvu10g1045 2217 CDD SF2_C_SNF 1314 1447 - -
Pvu10g1045 2217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1230 1568 IPR027417 -
Pvu10g1045 2217 Coils Coil 746 770 - -
Pvu10g1045 2217 Pfam QLQ 471 504 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pvu10g1045 2217 Gene3D - 798 871 - -
Pvu10g1045 2217 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1327 1504 IPR001650 -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 1 56 - -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 1844 1919 - -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 396 471 - -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 2133 2149 - -
Pvu10g1045 2217 Pfam Helicase conserved C-terminal domain 1326 1437 IPR001650 -
Pvu10g1045 2217 Gene3D - 1914 2040 IPR036427 GO:0005515
Pvu10g1045 2217 PANTHER ATP-DEPENDENT HELICASE BRM 31 2146 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Pvu10g1045 2217 Gene3D - 1236 1446 IPR027417 -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 2045 2065 - -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 1845 1900 - -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 1764 1826 - -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 1617 1641 - -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 2045 2217 - -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 2107 2125 - -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 2073 2094 - -
Pvu10g1045 2217 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1008 1173 IPR014001 -
Pvu10g1045 2217 Coils Coil 1543 1563 - -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 2151 2195 - -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 203 219 - -
Pvu10g1045 2217 Pfam SNF2-related domain 999 1303 IPR000330 GO:0005524|GO:0140658
Pvu10g1045 2217 SMART bromo_6 1921 2030 IPR001487 GO:0005515
Pvu10g1045 2217 SMART QLQ_2 469 506 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pvu10g1045 2217 SMART helicmild6 1353 1437 IPR001650 -
Pvu10g1045 2217 SMART ultradead3 992 1181 IPR014001 -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 297 365 - -
Pvu10g1045 2217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 976 1226 IPR027417 -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 1708 1741 - -
Pvu10g1045 2217 ProSiteProfiles QLQ domain profile. 470 506 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pvu10g1045 2217 PANTHER SNF2/RAD54 HELICASE FAMILY 31 2146 - -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 176 226 - -
Pvu10g1045 2217 MobiDBLite consensus disorder prediction 1776 1797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1045 Pvu-Chr10 35555021 35568060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1045 1017 1453 RAD5 or RAD16-like Gene Family AT1G02670 26.233 2.96e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu10g1045 SNF2_N 2.1e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1045 - - gmx:100807104 3842.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1045 10 35555021 35568060 Pvu10g1045 10 35555021 35568060 ECH
Pvu8g0620 8 5530800 5542410 Pvu10g1045 10 35555021 35568060 PCT