Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1038 TCAGATGTTTATTCATTTGGAATCATTCTATTGAGATTGATCACTGGGAAACCTGCTTTGGGAATAGCAAAGGAAGTGCAATATGCATTAGATAGTAGAAAGTTGAAATCCATCTTGGATCCATTGGCTGGAGATTGGCCATTTATGCTAGCTGAAGAGTTGGTTCGCTTGGCTTTGAGGTGTTGTGAGATGAATAGAAGAAACAGACCATATTTTTATCCAGATGTTTGGAGAATACTGGAACCAATGAGGGCTTCTTGTGGAGGCAGCAACACCTTTCAACTGGGTTCTCACGGAAAATGCCAACCTCCTCCATATTTCATTTGTCCAATCTCTCTGGAAGTCATGCAAGATCCACACGTGGCTGCAGATGGTTTTACTTATGAAGCTGAGGTTATACGTGAATGGCTGAAAAATGGTCGACACGTTTCACCAAGGACAAACTCTAAGTTTGCACATCACCACCTCATTCCCAACCACTCTCTTCGCCATGCAATTCAGGACTGGCTTCAAACTCACTGA 522 0.4272 SDVYSFGIILLRLITGKPALGIAKEVQYALDSRKLKSILDPLAGDWPFMLAEELVRLALRCCEMNRRNRPYFYPDVWRILEPMRASCGGSNTFQLGSHGKCQPPPYFICPISLEVMQDPHVAADGFTYEAEVIREWLKNGRHVSPRTNSKFAHHHLIPNHSLRHAIQDWLQTH* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1038 173 SMART Ubox_2 106 169 IPR003613 GO:0004842|GO:0016567
Pvu10g1038 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 173 IPR013083 -
Pvu10g1038 173 PANTHER U-BOX KINASE FAMILY PROTEIN 1 172 - -
Pvu10g1038 173 SUPERFAMILY Protein kinase-like (PK-like) 1 94 IPR011009 -
Pvu10g1038 173 PANTHER OS02G0152300 PROTEIN 1 172 - -
Pvu10g1038 173 Gene3D Transferase(Phosphotransferase) domain 1 1 92 - -
Pvu10g1038 173 SUPERFAMILY RING/U-box 100 173 - -
Pvu10g1038 173 CDD RING-Ubox_WDSUB1_like 107 148 - -
Pvu10g1038 173 Pfam U-box domain 104 173 IPR003613 GO:0004842|GO:0016567
Pvu10g1038 173 ProSiteProfiles U-box domain profile. 102 173 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1038 Pvu-Chr10 35344876 35345570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1038 1 173 U-box Gene Family AT2G45910 66.474 8.27e-78 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1038 - - pvu:PHAVU_010G0994000 368.237