LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g1037	ATGGCAGTGATGAGTTCTATGCCTGCAACTCCACCACAGGTCAATCCTAAGAACAAGCTTCGTGATATTGGGGTTCCTGGAATCACAGCTAGTAGGAGAGAAATTGTAAGTGAGCCTAGTCCAAGTATGGTTAATGATACAGTCTATGTTGCTGTGGCAAAAGATGTGAAAGACAGCAAATTAAATCTCATATGGGCAATACAAAATTCTGGAGGAAGGAGAATTTGCATCCTTCATGTTCACGTGCCAGCACCTATGATCCCTTTGATGGGTGCAAAATTTCCTGCAAGTGCGCTGAGAGAGCAGGAAGTTCAAGATTATCATGAGAGGGAAAGGCAAAACATTCAGAAGACTATGGATGCCTATCTTTATATCTGTCAAAAAATGGGGGTGCGGGCAGGGAAACTACACATTGAAATGGATAGTGTAGAAAAAGGGATTGTAGAACTCATCCACCAGTATGGCATACAGAGGCTTGTAATGGGAGCAGCATCTGATAAGTACCATTCTAGGAGAATGATATCCCTCAAATCTAAGAAAGCTATATATGTATGTGAACAAGCTCCAGCTTCATGTCATATACAGTTTATCTGCAACGGGTACCTCATACACACAAGGGATTGCAGATTGGATAGAGGGAATGTAGAGGTCGTATCTCCTTCTGTGCAGCGAATAGCAAACTCTGAAGTTGGGCATTCACCTAACATGGGGTCGCCATCCACAGTGCAAGCGCAAAATCGTTGGAGAAAACTAAGTAATCCCGGAAAAGAGTTATTTCGTAGAGTTAGGACTATCAGTGATGGAGATGGGAGGAGCATTGGATCTGTTTCTTCTTTAGAAGGGTTCTTAACTCCTCAGAGAAAGTTCGGTAAAGAAGCAAGTTGTGATGAGGTAGGTGGGCAGTCACGGCGGAGTCCTTCAGTATTCTCAATGTGCTGTGAGAGTTGTTCGGTTGATCCATATTTTATTAACAATGGCAGTGAGAATGTAGAATTGTCATTGAATGACTTTTCTATGAATAACAAGGATCTTCATCATTCACCATCTCCAAGTGTACTGGATGGAGGAATGGATGATGCTCTCTATGCTCAACTTGAACAGGCAATGGCTGAGGTTGCGAATGCTAAGCATGATGCATATCAAGAAACTTTTAAGCGTGTGAAAGCAGAAAGAGATTCCATTGATGCTATACGCAACGCTAAAGCCATTGAAAATTTGTATCAAGAAGAACTAAAACTAAGAAAAGAACAAGAGGAAGAAGTACAGAAAGCAAATGAAGAACTTGAGGATATGAAGAGGCAGATAAACAAAGTTAATGAGGAACTCCAAGTCGCCTTAGATCAGAAAATATCTCTAGAGAATCGAATTGCATCAACTGAACTTATTATAAAGGAGTTGGAGAAGAGGAATATATCTGCTGCTGAGCTGTCTCAAAAGTACAAGAATGAAGTAGATGATTTGCAAATGCAGCGTGATAATGCATTGGGAGAGGCCGAGGAGTTAAGGAGAACACAAGGGGAAGCCTCAAGCACGCACGGGCTTCAACCCTTCTCAGAATTCTCCTTTTCAGAGATTAAAGAAGCAACAAGAAACTTCAATCCATCCCTCAAGATTGGACAAGGAGGATATGGAAGTATATTTAGAGGTATCTTACGTCACACTGAGGTGGCTATAAAAATGTTGAGTCCTGATAGCACCCAAGGTCCAGTGGAGTTTCAGCAAGAGGTAGAAGTATTGAGCAACTTAAGGCACCCCAACCTTGTGACACTTATAGGGTCCTGCCCAGAATCCTGGACTCTTGTCTATGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTAAACTGCAAGGATAACACACCTCCATTATCATGGCAAACTAGAATTCGCGTTGCTGCAGAACTCTGCTCGGCTGTCATCTTTCTTCACTCAAGTAAACCTCACAGCATAGCACATGGTGATTTAAAACCAGGCAACATTCTCCTTGATGCAAACTTTGTAAGCAAGCTCGGAGACTTTGGAATCTGTCGTATATTATCTTGTCAAGAGGGTTCAAGTAGCAGCACTACACAGTTTTGGAGAACT	2085	0.4206	MAVMSSMPATPPQVNPKNKLRDIGVPGITASRREIVSEPSPSMVNDTVYVAVAKDVKDSKLNLIWAIQNSGGRRICILHVHVPAPMIPLMGAKFPASALREQEVQDYHERERQNIQKTMDAYLYICQKMGVRAGKLHIEMDSVEKGIVELIHQYGIQRLVMGAASDKYHSRRMISLKSKKAIYVCEQAPASCHIQFICNGYLIHTRDCRLDRGNVEVVSPSVQRIANSEVGHSPNMGSPSTVQAQNRWRKLSNPGKELFRRVRTISDGDGRSIGSVSSLEGFLTPQRKFGKEASCDEVGGQSRRSPSVFSMCCESCSVDPYFINNGSENVELSLNDFSMNNKDLHHSPSPSVLDGGMDDALYAQLEQAMAEVANAKHDAYQETFKRVKAERDSIDAIRNAKAIENLYQEELKLRKEQEEEVQKANEELEDMKRQINKVNEELQVALDQKISLENRIASTELIIKELEKRNISAAELSQKYKNEVDDLQMQRDNALGEAEELRRTQGEASSTHGLQPFSEFSFSEIKEATRNFNPSLKIGQGGYGSIFRGILRHTEVAIKMLSPDSTQGPVEFQQEVEVLSNLRHPNLVTLIGSCPESWTLVYEYLPNGSLEDRLNCKDNTPPLSWQTRIRVAAELCSAVIFLHSSKPHSIAHGDLKPGNILLDANFVSKLGDFGICRILSCQEGSSSSTTQFWRT	695

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu10g1037	695	CDD	STK_N	47	200	-	-
Pvu10g1037	695	Pfam	Protein kinase domain	536	692	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pvu10g1037	695	Gene3D	Transferase(Phosphotransferase) domain 1	605	695	-	-
Pvu10g1037	695	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	59	171	-	-
Pvu10g1037	695	SUPERFAMILY	Protein kinase-like (PK-like)	509	686	IPR011009	-
Pvu10g1037	695	Gene3D	Phosphorylase Kinase; domain 1	503	604	-	-
Pvu10g1037	695	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	650	662	IPR008271	GO:0004672\|GO:0006468
Pvu10g1037	695	PANTHER	U-BOX KINASE FAMILY PROTEIN	15	695	-	-
Pvu10g1037	695	SMART	serkin_6	532	690	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pvu10g1037	695	MobiDBLite	consensus disorder prediction	1	23	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g1037	Pvu-Chr10	35339508	35344731	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu10g1037	356	679	U-box Gene Family	AT2G45910	55.556	5.98e-122	382

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Pvu10g1037		Pkinase	6.1e-27	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g1037	-		-	pvu:PHAVU_010G0994001	1373.99

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu8g0632	8	5642855	5650476	Pvu10g1037	10	35339508	35344731	PCT

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