Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1018 TCACAAGATTGGAAAGCAAGACTCAAGATTCCACCAGCTGATACACGCTATAAGACTGAGGATGTAACAGCAACAAAAGGAAATGAATTTGAAGATTACTTTTTGAAGCGCGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGCAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGACCAAGATAATAATGTTATTCAAGTTGTTATACTGGTCCCAACCCGAGAATTGGCTTTGCAGACTTCTCAAGTGTGTAAAGAACTTGGAAAGCACTTGCAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATAATGCGCTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTGGCTAAGAAAGGTGTTTGTATTATGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTGTCTCCGGAGTTCCAACCTTCTATAGAGCAGCTGATTCATTTTCTTCCTACAAACCGTCAAATCTTGATGTTTTCAGCAACATTTCCAGTTACTGTAAAGGATTTCAAAGATAGGTATCTTCATAAACCTTATGTCATCAACCTTATGGATGAGCTAACTCTGAAGGGTATTACGCAATTTTATGCATTCGTGGAAGAGAGACAGAAAGTCCATTGCCTAAATACTCTATTTTCTAAGCTGCAAATAAACCAGTCTATCATCTTCTGCAACTCAGTGAATCGTGTGGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTACATTCATGCAAAGATGTTGCAAGACCATCGTAACAGAGTGTTTCATGACTTCCGCAATGGTGCATGTCGAAATCTTGTTTGTACTGATCTTTTTACTAGAGGAATAGACATTCAGGCTGTTAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAGACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGGCTGGCAGTGAACTTGATTACATATGAGGATCGCTTTAATTTATATAGGATTGAACAGGAACTTGGAACTGAAATAAAGCAGATTCCACCACAAATTGATCAGGCAATTTATTGCCGGTGA 1209 0.3904 SQDWKARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCIMKDCSMLVMDEADKLLSPEFQPSIEQLIHFLPTNRQILMFSATFPVTVKDFKDRYLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1018 402 CDD DEADc_DDX6 30 230 - -
Pvu10g1018 402 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 175 183 IPR000629 -
Pvu10g1018 402 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 59 229 IPR014001 -
Pvu10g1018 402 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 28 56 IPR014014 GO:0003724
Pvu10g1018 402 Gene3D - 9 232 IPR027417 -
Pvu10g1018 402 Gene3D - 233 402 IPR027417 -
Pvu10g1018 402 SMART helicmild6 279 360 IPR001650 -
Pvu10g1018 402 Pfam Helicase conserved C-terminal domain 254 360 IPR001650 -
Pvu10g1018 402 SMART ultradead3 47 243 IPR014001 -
Pvu10g1018 402 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 399 IPR001650 -
Pvu10g1018 402 CDD SF2_C_DEAD 240 369 - -
Pvu10g1018 402 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 1 402 - -
Pvu10g1018 402 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 402 - -
Pvu10g1018 402 Pfam DEAD/DEAH box helicase 53 217 IPR011545 GO:0003676|GO:0005524
Pvu10g1018 402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 382 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1018 Pvu-Chr10 35158259 35163318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1018 30 395 Eukaryotic Initiation Factors Gene Family AT3G19760 38.587 3.87e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1018 K12614 - gmx:100801402 799.66