Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1010 ATGGATCGAGGAGACCAAATGACATTATCTGGCTCTGCATCTTACTACATGCAGAGAGGAATACCTGGTGCTGGAACTCAGTCTGAACTGCACAACTCGCCTAATATTCGACCACTGTCTAATCCTAATTTACCATTTCAATCAAGCATTGGTGGTGGTGGTACCATTGGATCTACATTACCATTGGAATCTTCAGGAATTTCATCTCCATGTGTAAATGTGAGTGTTCCTTCTGGTGCACTGGCTGTGGAATCTGTCAAAAGGAAGAGAGGAAGGCCTAGAAAATACGGGCCTGATGGATCTGTGTCGTTGGCATTGACTCCAACACCAGCAAGTCATCCTGGAGCCCTGGCACCAGGCCAGAAACGAGGTAGAGGGCGCCCACCAGGATCAGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGCACTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCACATCATTACCATAGCAGTTGGAGAAGACGTTGCAACAAAAATCATGGCATTTTCTCAGCAGGGGCCTAGAGCTATATGTATTTTGTCAGCTAATGGTGCTGTGTCTACTGTGACACTTCGTCAGCCTTCAACATCAGGTGGCACTGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCAGGCTCTTACTTGGTTGCCGACAGTGGCGGCTCCCGCAATCGAACCGGTGGATTAAGTGTTTCCCTTGCAAGCCCTGATGGTCGTGTCATAGGTGGAGGAGTTGGTGGAGTGCTTATTGCTGCAAGTCAAGTTCAGGTGATAGTTGGAAGCTTTACATGGGGTGGATCAAAGACAAAGATAAAGAAAAAAGAACCTTCAGAAGTGGCAGAAGTTGCTATAGAGAATGATCATCAGACAGTTCATAATCCAGTTGCAGTGAATAGCATCTCCCCGAATCAAAATCTTACTCCAACTTCATCTTTAAGTCCGTGGCCAGCATCACGACCATTGGATATGCGCAATTCTCATATTGACATTGATTTAATGCGCGGGTGA 1023 0.4682 MDRGDQMTLSGSASYYMQRGIPGAGTQSELHNSPNIRPLSNPNLPFQSSIGGGGTIGSTLPLESSGISSPCVNVSVPSGALAVESVKRKRGRPRKYGPDGSVSLALTPTPASHPGALAPGQKRGRGRPPGSGKKQQLASLGALMSGSAGMGFTPHIITIAVGEDVATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLVADSGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIAASQVQVIVGSFTWGGSKTKIKKKEPSEVAEVAIENDHQTVHNPVAVNSISPNQNLTPTSSLSPWPASRPLDMRNSHIDIDLMRG* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1010 340 CDD DUF296 153 267 IPR005175 -
Pvu10g1010 340 MobiDBLite consensus disorder prediction 1 57 - -
Pvu10g1010 340 MobiDBLite consensus disorder prediction 85 137 - -
Pvu10g1010 340 ProSiteProfiles PPC domain profile profile. 148 290 IPR005175 -
Pvu10g1010 340 Gene3D - 154 297 - -
Pvu10g1010 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 316 IPR039605 GO:0003680
Pvu10g1010 340 MobiDBLite consensus disorder prediction 25 57 - -
Pvu10g1010 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 268 IPR005175 -
Pvu10g1010 340 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Pvu10g1010 340 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Pvu10g1010 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 316 - -
Pvu10g1010 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1010 Pvu-Chr10 35043620 35049071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1010 1 340 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.273 3.47e-89 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1010 - - gmx:100799791 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1010 10 35043620 35049071 Pvu10g1010 10 35043620 35049071 ECH
Pvu8g0669 8 5985142 5991857 Pvu10g1010 10 35043620 35049071 PCT