Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1004 ATGGGAAGGAAACCCTGTTGTGACAAGATGGGTTTGAAGAAGGGTCCTTGGACTGCTGAAGAGGATGAGATTCTTGTCAATTATATCAACATGAATGGTGGCCATGGAAGTTGGCGTTCTCTCCCCAAGTTAGCAGGTCTTCTTCGTTGTGGTAAGAGTTGTCGGCTAAGATGGACCAACTACCTCAGACCAGATATTAAACGTGGTTCCTTTACTCTTGAGGAAGAAAAACTAATCATACAGCTTCATGGTATCCTTGGAAATAGGTGGGCTGCTATAGCCTCTCAGCTACCAGGAAGAACAGACAATGAAATCAAGAACTTATGGAACACCCATTTGAAGAAACGTCTCATTTGCATGGGCCTTGACCCTCAAACCCACCAGCCACTGTCCTCTTCATGCAACCCTGATGGCAAGGCCCATGCAGCATCCACCTCAACCCGCCACATGGCCCAGTGGGAGAGTGCAAGGCTTGAAGCAGAGGCCAGGCTCTCAAGGGAGCCCTATTTGTTCAACAACTCCAACAAAACTGACTCTGACTACTTCCTCCGAATGTGGAACTCAGAAGTTGGACAATCTTTTCGTGATGTGCACAAATCAGACAACAAAGGTGGCTGTCAAAGTCCTATTTCTCTAGGGTCATTGTCTGCTACCACCACCACAGATTTGGCTTCCAACCCTGCAAGCATTGTGAAAGAGGATTTGGTGTGGGGTGGTAGCAAGAAAATTGCCTCCGATTCATCAAGCTCTAGTGAACTAGAAGAAGACTCATGTGACACTTCATTGCAGCTCTTGTTAGACTTCCCTATAAACAATGACATGAGCTTCTTAGAATGA 837 0.4636 MGRKPCCDKMGLKKGPWTAEEDEILVNYINMNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGSFTLEEEKLIIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGLDPQTHQPLSSSCNPDGKAHAASTSTRHMAQWESARLEAEARLSREPYLFNNSNKTDSDYFLRMWNSEVGQSFRDVHKSDNKGGCQSPISLGSLSATTTTDLASNPASIVKEDLVWGGSKKIASDSSSSSELEEDSCDTSLQLLLDFPINNDMSFLE* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1004 278 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pvu10g1004 278 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pvu10g1004 278 PANTHER TRANSCRIPTION FACTOR MYB104-RELATED 1 278 - -
Pvu10g1004 278 CDD SANT 16 62 IPR001005 -
Pvu10g1004 278 SMART sant 67 115 IPR001005 -
Pvu10g1004 278 SMART sant 13 64 IPR001005 -
Pvu10g1004 278 Gene3D - 11 68 - -
Pvu10g1004 278 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pvu10g1004 278 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Pvu10g1004 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pvu10g1004 278 SUPERFAMILY Homeodomain-like 10 109 IPR009057 -
Pvu10g1004 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pvu10g1004 278 CDD SANT 70 113 IPR001005 -
Pvu10g1004 278 Gene3D - 70 117 - -
Pvu10g1004 278 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1004 Pvu-Chr10 34960666 34963434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1004 1 278 MYB Transcription Factor Family AT3G61250 62.069 3.83e-120 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu10g1004 Myb_DNA-binding 5.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1004 K09422 - gmx:100788528 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0683 8 6099109 6101752 Pvu10g1004 10 34960666 34963434 PCT