LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g0998	ATGGATGCAGCTTTTAGGTTACCGCAGTCTAATGTGGTATTAGATGGTTTGAATTCTTGCACTGTATTTGGAGGGAGAGGTTTTGGTTGCGCTTTTCTAGGCAACTTGAGGACTACTACGAAGGATCGTTTTAGTCGGATGAATAAGATAGGTAGTTGGAGTGGTTCGAGAGTAGACTGTTTCGGAGAGTTGAAAGTTTTGAGTGGGAAGAGGAGTTTGTGTTGGAAGAGAAATGAACTTTTTAGGGGGAATAGGAAAATTTGGACAAAGTGTCAGGGTAACGATTCTTTATCATATCTCAACGGCAATGGACGGAATGTTGATAGGGTGGAAAGTGCGGATGAGGACTACGGTTCCAGTGCCGAATCGAGTGAACCTTTGGGAGAAGAAGGGCAAGAAGGGAGGAAAGAAGCTGGGGGTGAAGTAGTGGAGGAGCAAAATGTGGATGAGTTGAAAGAACTGCTGCAAAAGGCCAAGAAAGAATTAGAAGCTGCTCGAGAAAACAGCATTGCATTTGAGGAAAAGGTTAAGAAGATATCTGAGACTGCGATTTTTTTGCAAGATGAAGCAGCAAGTTCTTGGAACAACGTTACTTCTACCCTTGACATCATCCAAGATATTGTGAGTCAAGAATTTGTTGCCAAAGAAGCTGTTCAGAAAGCAACTATGGCTCTTTCTCTGGCTGAGGCAAAGCTTCAAGTAGCCATAGAATCTTGCGAGGTTACAAATGATGATAAAGATATAATGCAAGAAGAGAAGGAACTTTTGGATGCTAAGGAAGATATCAAGGAAGGCCAGACAAATTTAGCAAATTGCGAGAGTAAGCTGAGAGACTTGCAATGTAGAAAGGAGGAGTTCCAGAATGAAGTTAACAAATTACATGAAGTTGCAGAACAGGCGCAGCTGAAAGCAGCAAAAGCAGAGGAAGATGTTGCAAACATAATGCATTTAGCGGAGAAAGCTGTTGCTGCCGAAATTGAGGCTGCGCAACACGTGAATGATGCAGAGATGGCATTGGAGAAAGCAGAAAAATCTGCCTCTAGTTTTAATGCTGATACGAAAGACACTCTACGAGTACAAGAGGTTGTAGGTATTCCAGAGGACGAGGAAGTGGTTCAAGGTTTTTCTGGTGATGACGTGCTTAAAAGAGAGGCTGATATCTCAAATGATGATGAGCTTTCACCCGAAATACAATCTGATATCAATAGGCAAAGTTTGGAAGACATGGCACAATCTGATTATCTGAGTGATCATGAGAATGGACAATTAATCTTAGACTCTTCTAAAGAAGCTGAAGTTGAAACAGAGAAGTCAAAGAATGTAGTTCAAACAAAAAAACAGGAAACACAAAAAGATTTGACTAGAGAGAACTCATCATTTGCTCCCAAGACATTATTGAAGAAATCTTCACGATTTTTTCCTGCATCATTCTTCTCTTTTACTGCCGATGAGGCTGATAACACACCTGCATCGGTTTTCCTTGATCTTATGGAGTCTGTACAGAAGCAACTACCCAAGCTAATTGTTGGATTATTGTTCATTGGAGCTGGGCTTGTACTCTATACGAATAGAACAGAGAGACGTGCTCAGCTGCAGCAGCCAGAAGTCATTGTAACCACTGTTGAAGAATCTTCAACTGCAAAGCCTCCGGTTAGACAGCTTCAGGATCTTCCCAAGAGAATTAAGAAGATTATTGCATCATTACCTGATCAAGAGGTGAATGAGGAGGAAGCCTCCCTCTTTGACATGCTCTGGTTACTCCTTGCAAGTGTTGTATTTGTACCAATATTTCAAAAGATTCCTGGAGGCAGTCCTGTTCTTGGCTACTTGGCTGCTGGTATCTTGATTGGGCCATATGGTCTCTCCATCATTCGTCATGTACATGGGACAAAAGCAATAGCCGAGTTTGGAGTTGTTTTCCTGTTATTCAATATTGGCCTGGAGCTTTCTGTTGAGAGGCTTAGTTCAATGAAGAAGTATGTCTTTGGATTCGGCTCTGCTCAGGTTATGGTGACTGCTGTAGTTGTTGGCTTGGTAGCTCATTATATTTGTGGTCAAGCTGGCCCTGCTGCTATCGTCATTGGGAATGGTCTAGCATTATCATCAACTGCTGTTGTTTTGCAAGTGTTACAGGAGAGAGGTGAGAGCACATCACGGCATGGAAGGGCTTCGTTCTCTGTTTTGCTTTTTCAGGATTTGGCTGTTGTTGTCTTGCTAATACTCATACCTCTAATTTCACCTAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCATTGCTGAAGCACTTGGTCTGGCCGCTGTTAAGGCAGTGGTTGCCATTGCAGCCATAATTGCAGGTGGACGATTGCTCCTGCGACCCATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTCGTTATTCTTGGGACTAGCCTTCTCACAGCCAGGGCTGGACTTTCAATGGCATTGGGGGCATTTTTGGCGGGTTTACTATTGGCAGAAACAGAGTTTTCCTTACAGGTTGAATCTGATATTGCCCCGTACCGTGGCCTTCTTCTGGGTCTCTTCTTTATGACGGTTGGGATGTCAATTGATCCAAAACTTCTCGTTTCAAACTTTCCAGCCATTACTGGGACCTTGGGACTTTTGATATTTGGCAAGACTTTGTTGGTTTCTTTAATTGGTAGAGCATTTGGTATTTCTCTCATTTCTTCTATTAGAGTTGGTCTTCTTCTTGCTCCTGGGGGAGAATTTGCATTTGTAGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAGTTGTCCTCCTTACTGTTTCTTGTTGTGGGAATTTCAATGGCCATCACTCCTTGGCTAGCTGCAGGAGGGCAGTTCCTTGCTTCCCGTTTTGAGCTGCATGATGTTCGAAGTTTATTACCTGAAGAAAGTGAGACAGACGATTTGCAAAATCATATCATTATTTGTGGATTTGGGCGAGTTGGGCAAATCATCGCACAACTTCTTTCTGAGAAACTTATTCCTTTTGTTGCTCTAGACGTGAGAAGAGAAGAAAGGGAAAAAGTCTTTTGTAGAAGCTGTCAAAGGTGA	3099	0.4247	MDAAFRLPQSNVVLDGLNSCTVFGGRGFGCAFLGNLRTTTKDRFSRMNKIGSWSGSRVDCFGELKVLSGKRSLCWKRNELFRGNRKIWTKCQGNDSLSYLNGNGRNVDRVESADEDYGSSAESSEPLGEEGQEGRKEAGGEVVEEQNVDELKELLQKAKKELEAARENSIAFEEKVKKISETAIFLQDEAASSWNNVTSTLDIIQDIVSQEFVAKEAVQKATMALSLAEAKLQVAIESCEVTNDDKDIMQEEKELLDAKEDIKEGQTNLANCESKLRDLQCRKEEFQNEVNKLHEVAEQAQLKAAKAEEDVANIMHLAEKAVAAEIEAAQHVNDAEMALEKAEKSASSFNADTKDTLRVQEVVGIPEDEEVVQGFSGDDVLKREADISNDDELSPEIQSDINRQSLEDMAQSDYLSDHENGQLILDSSKEAEVETEKSKNVVQTKKQETQKDLTRENSSFAPKTLLKKSSRFFPASFFSFTADEADNTPASVFLDLMESVQKQLPKLIVGLLFIGAGLVLYTNRTERRAQLQQPEVIVTTVEESSTAKPPVRQLQDLPKRIKKIIASLPDQEVNEEEASLFDMLWLLLASVVFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGFGSAQVMVTAVVVGLVAHYICGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRASFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAVVAIAAIIAGGRLLLRPIYKQIAENQNAEIFSANTLFVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPAITGTLGLLIFGKTLLVSLIGRAFGISLISSIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMAITPWLAAGGQFLASRFELHDVRSLLPEESETDDLQNHIIICGFGRVGQIIAQLLSEKLIPFVALDVRREEREKVFCRSCQR*	1033

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g0998	1032	Pfam	Sodium/hydrogen exchanger family	585	956	IPR006153	GO:0006812\|GO:0015299\|GO:0016021\|GO:0055085
	Pvu10g0998	1032	PANTHER	K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED	1	1021	-	-
	Pvu10g0998	1032	Gene3D	-	971	1029	-	-
	Pvu10g0998	1032	MobiDBLite	consensus disorder prediction	128	142	-	-
	Pvu10g0998	1032	Coils	Coil	141	182	-	-
	Pvu10g0998	1032	MobiDBLite	consensus disorder prediction	111	142	-	-
	Pvu10g0998	1032	MobiDBLite	consensus disorder prediction	428	453	-	-
	Pvu10g0998	1032	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	985	1021	IPR036291	-
	Pvu10g0998	1032	PANTHER	K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC	1	1021	-	-
	Pvu10g0998	1032	MobiDBLite	consensus disorder prediction	428	454	-	-
	Pvu10g0998	1032	TIGRFAM	2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family	587	867	IPR004771	GO:0006812\|GO:0008324\|GO:0016021
	Pvu10g0998	1032	Coils	Coil	332	352	-	-
	Pvu10g0998	1032	Gene3D	-	576	961	IPR038770	-
	Pvu10g0998	1032	Coils	Coil	248	317	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g0998	Pvu-Chr10	34866270	34877107	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu10g0998	91	1017	Inorganic Solute Cotransporters	AT4G00630	67.119	0.0	1146

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g0998	-		-	gmx:100791174	1526.15