Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0997 ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCATGTGACAAGACTGTCTACGTGGTTGACTTGTTAACCCTTGAAGGCATTCCTTACCATAAGAACTGCTTCAAATGCAGCCACTGCAAGGGATATCTCACGATGTGCACATACTCCTCAATGGATGGAGTTCTCTATTGCAAGCCTCATTTTGAACAACTCTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCGCAAAGTCTACTGAGAAGCAAAACGATATTAATAGAACCCCTAGCAAGCTATCTTCCATGTTCAGTGGAACCCTGGACAAATGTGCAGTATGCTCAAAAACAGTGTATCCTCTTGAAAAGGTGTCACTGGAAGGGGAATGCTACCACAAGACTTGTTTCAGGTGTGCTCATGCAGGGTGCCCTCTGACACATTCAAACTATGCTGCCCTTGATGGTGTTGTCTACTGCAGAGTCCACTTTGCACAACTGTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAAGAGGACTGGTTCATCTACACCTCCTGAGCCTCTATTTGAGGAGCCATCACATCCAGCACCAGCAGAAGAATCTGAGGAACCTCCAGTAGTAGAAGATGAAGAAAAAGAAAAAGAAAAAGAAGAAGAAGAAAAAGAAGAAGAGAGCTCTTGA 678 0.4425 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGYLTMCTYSSMDGVLYCKPHFEQLFKESGNFSKNFAKSTEKQNDINRTPSKLSSMFSGTLDKCAVCSKTVYPLEKVSLEGECYHKTCFRCAHAGCPLTHSNYAALDGVVYCRVHFAQLFMEKGNYSHVLQAAAHKRTGSSTPPEPLFEEPSHPAPAEESEEPPVVEDEEKEKEKEEEEKEEESS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0997 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Pvu10g0997 225 MobiDBLite consensus disorder prediction 175 225 - -
Pvu10g0997 225 PANTHER OS06G0237300 PROTEIN 1 202 IPR045268 GO:0051015
Pvu10g0997 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Pvu10g0997 225 SMART lim_4 9 61 IPR001781 -
Pvu10g0997 225 SMART lim_4 103 155 IPR001781 -
Pvu10g0997 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Pvu10g0997 225 Pfam LIM domain 10 65 IPR001781 -
Pvu10g0997 225 Pfam LIM domain 104 159 IPR001781 -
Pvu10g0997 225 Coils Coil 206 225 - -
Pvu10g0997 225 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 202 - -
Pvu10g0997 225 Gene3D Cysteine Rich Protein 5 100 - -
Pvu10g0997 225 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Pvu10g0997 225 MobiDBLite consensus disorder prediction 201 225 - -
Pvu10g0997 225 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Pvu10g0997 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Pvu10g0997 225 CDD LIM1_SF3 6 68 - -
Pvu10g0997 225 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Pvu10g0997 225 Gene3D Cysteine Rich Protein 101 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0997 Pvu-Chr10 34846249 34848313 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pvu10g0997 LIM 1.4e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0997 - K09377 gmx:100305845 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0997 10 34846249 34848313 Pvu10g0997 10 34846249 34848313 ECH
Pvu8g0685 8 6112188 6114287 Pvu10g0997 10 34846249 34848313 PCT