Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0986 ATGGAAGCAGCAACAGTAGCAACCTCTTCTCAGAGAAAGCTGAAGCGGAAGCGAACCCTAGCAAAAAGCGATCCTGAATTCGACCGTCTTAACTCGCTTCCGTGGAACTCCTCTCTTCCTCAAAACGACGACGATGGCGCTTTCTCCATCTTCATTGGCTCCAACGAACTCGAAGGAGGTTTTCTTTCGCTCGAGGAGATTGATGAGGCGGAGTATGGTTTGAATATTCCTGAACCTGAATATGGCAAGAGGAAGACGAAGAAGAAGTCTGTACAGGATGAAGATGTGAAGAAGCAGCAGCAAGATGGAGTTGGCGGTGCTAGTAGTGACGAGGTCGAAGCTGAGTTGGACGAGAGTGTGAAGGCTAAAGAGAAGAAAAAGAAGAAGAAGAAAAAGAAGAAGACGAAAAAGAAGGATGCTACGGAAGACCAGAAAGTTGAGCAGCCAGATGCTGGTTTAGATGCGAATGTGAAGGACGGTAACGGTGAAGAGGACAATGATGAAACTGAATATTATGCATGGAATGAGTTGAGGCTTCATCCTCTCCTAATGAAAGCAATATGCAAGCTTGGCTTCAAGGAACCAACACCAATACAGAAGGCTTGCATTCCAGCTGCTGCTCATCAAGGAAAGGATGTTGTTGGGGCTGCAGAGACAGGATCTGGTAAAACACTGGCGTTTGGTTTGCCCATTTTGCAACGCCTTTTGGAAGAGAGAGACAAGGATGCAAACGTGGTTGAAGAACCCGAGAAGTATTCTTCTAAAGGCGTTTTGAGGGCTCTTATTATTGCTCCAACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCTGTTGCTAAGTATATTAATGTTAGGGTGACCCCTATAGTTGGTGGCATTTTAGCAGAAAAACAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTTGTCGGAACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAAAAACATCTAGTTGAGTTACATTCACTCTCTTTCTTTGTGCTTGATGAGGCTGATCGAATGGTACAAAGTGGTCATTTTAAGGAGTTGCAGTCTATAATTGATATGCTTCCCATGTCCAATATCTCCACTGAAGATAATTCTCAAAATGTACAAAAGAGTTGTGTTACTGTTTCTAGTTACCAAAGAAAGAAAAGGCAAACACTTGTTTTTTCAGCAACTATTGCACTGTCTTCTGATTTTCGCAAGAAGCTAAAACATGGCTCAATTCAAAAGAAGCAATCATCAACAGAGGGATTGAACTCTATCGAAACTCTTTCTGAGCGTGCAGGAATGAGATCCAATGCTGCAATTATTGATCTTACTAATCCATCTATATTAGCAGCTAAGCTTGAGGAGTCATTTATTGAATGCAGAGAAGAAGATAAAGACGCATATTTGTATTATATTTTGACTGTCCATGGACAAGGTCGAACAATAGTTTTCTGCACGTCAATTGCAGCTTTACGTCATATTTCTTCCATATTGCGCATTCTTGGAATCAATGTTTGGACTCTTCATGCCCAAATGCAGCAGCGTGCCCGATTGAAGGCCTTTGATCGCTTTCGGGGAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCTAGGGGTCTCGATATTCCTGATGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCCTCCGCTGAAGGTTGTAGCATTGCTTTAATATCAACGAGAGATACGTCAAAGTTTGCTTCACTTTGCAAATCATTTTCTAAGGATAACTTTCAGCGGTTTCCTTTAGAGAACTCTTTCATGCCAGAGGTCCTAAAAAGATTGTCTCTTGCACGACAAATAGACAAGATAACAAGGAAGGATTCCCAGGTAAAGGCTGAGAAAAGCTGGTTTGATCGGAATGCTAGCTCAGTGGAATTAGTTACTGAAAATTATGACAGTGAAGAGGAGCAAGTGAACAAACAGAAGCAAATGAAGGTCAGCTCTAGACAATTGAAGAAATTGCAGGAGGAGCTCAATATGCTGATTTCTCGCCCATTAGAATCAAAATCATTTTCTCATCGGTATTTAGCAGGGGCTGGTGTCACACCCCTCATGCAGGAGCAATTGCAACAGTTAGCAAGGCAAAAACTAAGTGATCACCAGGGTTCTAGTCTAGGCAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGCATGGATGCACTTCAGGCACTTCGTAGTGCTGGTGAAGAGGTGCGAATGAATATCAAGGATTTGGCAGGAAAACAGAGAAATGTGGAGACTTTAAAAAGAAAGCGAAAAGAGGAGAAAAAACGTTCGCGTGATCAGCGCAGAAAGCAGAAGAAAAAGCTAAAATACGGGGATGAATAG 2415 0.424 MEAATVATSSQRKLKRKRTLAKSDPEFDRLNSLPWNSSLPQNDDDGAFSIFIGSNELEGGFLSLEEIDEAEYGLNIPEPEYGKRKTKKKSVQDEDVKKQQQDGVGGASSDEVEAELDESVKAKEKKKKKKKKKKTKKKDATEDQKVEQPDAGLDANVKDGNGEEDNDETEYYAWNELRLHPLLMKAICKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRLLEERDKDANVVEEPEKYSSKGVLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISTEDNSQNVQKSCVTVSSYQRKKRQTLVFSATIALSSDFRKKLKHGSIQKKQSSTEGLNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAFDRFRGNENGILVATDVAARGLDIPDVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISTRDTSKFASLCKSFSKDNFQRFPLENSFMPEVLKRLSLARQIDKITRKDSQVKAEKSWFDRNASSVELVTENYDSEEEQVNKQKQMKVSSRQLKKLQEELNMLISRPLESKSFSHRYLAGAGVTPLMQEQLQQLARQKLSDHQGSSLGKKGKLVVIGQDCMDALQALRSAGEEVRMNIKDLAGKQRNVETLKRKRKEEKKRSRDQRRKQKKKLKYGDE* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0986 804 Pfam Helicase conserved C-terminal domain 467 575 IPR001650 -
Pvu10g0986 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 591 IPR027417 -
Pvu10g0986 804 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 455 616 IPR001650 -
Pvu10g0986 804 Gene3D - 453 695 IPR027417 -
Pvu10g0986 804 Gene3D - 118 414 IPR027417 -
Pvu10g0986 804 MobiDBLite consensus disorder prediction 78 100 - -
Pvu10g0986 804 PANTHER RNA HELICASE 85 724 - -
Pvu10g0986 804 Coils Coil 109 143 - -
Pvu10g0986 804 Pfam DEAD/DEAH box helicase 196 401 IPR011545 GO:0003676|GO:0005524
Pvu10g0986 804 Coils Coil 652 692 - -
Pvu10g0986 804 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 339 347 IPR000629 -
Pvu10g0986 804 SMART ultradead3 191 428 IPR014001 -
Pvu10g0986 804 CDD SF2_C_DEAD 456 585 - -
Pvu10g0986 804 Coils Coil 767 794 - -
Pvu10g0986 804 MobiDBLite consensus disorder prediction 771 804 - -
Pvu10g0986 804 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 172 200 IPR014014 GO:0003724
Pvu10g0986 804 SMART helicmild6 495 576 IPR001650 -
Pvu10g0986 804 CDD DEADc_DDX24 183 445 - -
Pvu10g0986 804 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 418 IPR014001 -
Pvu10g0986 804 MobiDBLite consensus disorder prediction 1 49 - -
Pvu10g0986 804 MobiDBLite consensus disorder prediction 30 44 - -
Pvu10g0986 804 MobiDBLite consensus disorder prediction 72 166 - -
Pvu10g0986 804 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 85 724 - -
Pvu10g0986 804 MobiDBLite consensus disorder prediction 782 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0986 Pvu-Chr10 34641937 34652143 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0986 173 592 Eukaryotic Initiation Factors Gene Family AT5G11200 28.798 8.34e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0986 K14805 - gmx:100806018 1305.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0986 10 34641937 34652143 Pvu10g0986 10 34641937 34652143 ECH