Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0965 ATGGGTTTTGATACCAATTTGGTGACTACTATCATTGGGTTTGGGTTGAGTGCAAGTTTCATTGTCTTCGTTTGCTCAAGAATAATTTGTGGAAGACTACAAGAGCGTGTGGGAGTACCAAGTTTATATGAAATTGAACCAAGAACAGACATAGAACGGCCAGAATTTCATGGTAATGACCCTGCACCTGCTTTTGTTGCTGCAATCCCCACTTTGAGTTTCAACCATGAAGCCTTCGTTTCAACGGGAAGCACACAGTGTGTGATATGTTTGGCAGAGTACAAAGAAAAAGAACTACTGCGCATCATACCAAAATGTGGCCACACTTTTCACCTTTCTTGCATTGATATGTGGCTGAGAAAACAATCCACTTGTCCAATGTGTCGTTTGTCACTGCAAAATTCTTCTGATTCAAAACATGTGAGTCATGTAACATTTACCATTAGACAGTCTCTGGCTGAGTCCAATACTTCAGAAAGGAACATAGACAGTGACAGACAAATTGAACCAAATTCTATGATATCTCTGCAAAGTTTGGGAGAACTAGAAGGTAGATAG 558 0.4014 MGFDTNLVTTIIGFGLSASFIVFVCSRIICGRLQERVGVPSLYEIEPRTDIERPEFHGNDPAPAFVAAIPTLSFNHEAFVSTGSTQCVICLAEYKEKELLRIIPKCGHTFHLSCIDMWLRKQSTCPMCRLSLQNSSDSKHVSHVTFTIRQSLAESNTSERNIDSDRQIEPNSMISLQSLGELEGR* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0965 185 PANTHER OS02G0676500 PROTEIN 2 171 - -
Pvu10g0965 185 CDD RING-H2_EL5_like 86 129 - -
Pvu10g0965 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 139 IPR013083 -
Pvu10g0965 185 PANTHER OS11G0150450 PROTEIN 2 171 - -
Pvu10g0965 185 Pfam Ring finger domain 86 129 IPR001841 -
Pvu10g0965 185 SUPERFAMILY RING/U-box 86 135 - -
Pvu10g0965 185 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Pvu10g0965 185 SMART ring_2 87 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0965 Pvu-Chr10 34055353 34056594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0965 77 181 C3H Transcription Factor Family AT4G10160 39.048 1.20e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0965 - - gmx:100800505 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0715 8 6324438 6326775 Pvu10g0965 10 34055353 34056594 PCT