Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0963 ATGGCAGGAGCTGAAGCTACAAAATATGCTTCTCCTACAAGTCCTACAACCACTGCTACCACCAACATGGCCACCAGATCGAACAAGCCAGCAACCATGATCAGAAGATTCATTGGGGTGAGGCAAAGACCCTCGGGAAGGTGGGTGGCTGAGATCAAAGACTCTTCTCAGCACGTGAGGTTGTGGCTTGGAACCTATGACACCCCAGAAGAGGCTGCAAGGGCTTATGATGAAGCTGCAAGAGCCCTGAGAGGTGAAAATGCCAGAACCAACTTTGCTCCAATGAACCAAGTCACAGGGCAATCAGGGTCTAACCTTTTAACTGGTGATGGGAAGCCTGGTTTGAGCTTTGCTTCCTTGAAAGCCAAGTTGAGTAAGAATCTTCAGAACATCATGGCTAGGGCAAGTGATCACAACAAGTCCTCGAAGAGCCGGGTGAGTGACCACTTCACCTTTGCCAGCATATTTCACCGCAGGAGCTACCAAATCCCTGAAGGGGACATGAGGAACATTGAGAAAGTGGTGCAGCCTAGCATTATTGTACCACCTGTGGAAGGTGGTGTTGATTATGCTGCTGCTGCTAACTGGGAAAGTGCTTCCAGTGTCTCTGATTGCAGCTCTGAGTGGGCCGGGTTCGGGAAACTCGGGTTGGATCAGTCAGACGGATCGGATATTGGAGAGTTCGGTGTTGGTGATCAAGGGTTCTTGGAGCAGCTGATGGGGTGGGTTGAAAGCCCTGATGTTAGTGATCAAAGTGAGTGTTCAAGGAGTAAGAGGTTCAAGGTCTCTTCTTCTGTGCTTGTACCTCCAACTTTCACTGCCTCTCCTTATGATTGTGGATCCCCTTATAGCGGTTATGCCTCTCCTTACAGCGGTTATGCCTCTCCTTATAACGGTTATGCCTCTCCCTATAACGGTTGTGCCTCCCCTTGTAATGGTTGTGCTTCTCCATATTACAATAAGAAGTGA 969 0.4923 MAGAEATKYASPTSPTTTATTNMATRSNKPATMIRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAPMNQVTGQSGSNLLTGDGKPGLSFASLKAKLSKNLQNIMARASDHNKSSKSRVSDHFTFASIFHRRSYQIPEGDMRNIEKVVQPSIIVPPVEGGVDYAAAANWESASSVSDCSSEWAGFGKLGLDQSDGSDIGEFGVGDQGFLEQLMGWVESPDVSDQSECSRSKRFKVSSSVLVPPTFTASPYDCGSPYSGYASPYSGYASPYNGYASPYNGCASPCNGCASPYYNKK* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0963 322 SUPERFAMILY DNA-binding domain 37 93 IPR016177 GO:0003677
Pvu10g0963 322 MobiDBLite consensus disorder prediction 9 27 - -
Pvu10g0963 322 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Pvu10g0963 322 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Pvu10g0963 322 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Pvu10g0963 322 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Pvu10g0963 322 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 256 - -
Pvu10g0963 322 MobiDBLite consensus disorder prediction 1 27 - -
Pvu10g0963 322 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 256 - -
Pvu10g0963 322 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Pvu10g0963 322 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Pvu10g0963 322 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0963 Pvu-Chr10 34005917 34007381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0963 36 107 AP2-EREBP Transcription Factor Family AT5G19790 64.000 9.21e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu10g0963 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0963 K09286 - gmx:100799444 447.203